miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24740 3' -56.6 NC_005264.1 + 52180 0.66 0.926924
Target:  5'- cGGCgCUCcugauaaauguGCUgaggGCCGUGGGGCGCGguggCGc -3'
miRNA:   3'- cCUG-GAG-----------CGA----UGGCACUCCGUGCa---GC- -5'
24740 3' -56.6 NC_005264.1 + 138210 0.66 0.923763
Target:  5'- cGGCCaaacgacaaccgcagUCGCUGCUGUcccccggaguaGAGGCGCuGUUGg -3'
miRNA:   3'- cCUGG---------------AGCGAUGGCA-----------CUCCGUG-CAGC- -5'
24740 3' -56.6 NC_005264.1 + 19229 0.66 0.92161
Target:  5'- aGGGCCggcagUUGCUACgugccaCGUGAaaGGUACGUCc -3'
miRNA:   3'- -CCUGG-----AGCGAUG------GCACU--CCGUGCAGc -5'
24740 3' -56.6 NC_005264.1 + 54600 0.66 0.916067
Target:  5'- uGGAgCUUgaGCUAgUGUcGGGCACGUCc -3'
miRNA:   3'- -CCUgGAG--CGAUgGCAcUCCGUGCAGc -5'
24740 3' -56.6 NC_005264.1 + 58131 0.66 0.916067
Target:  5'- cGACCUCGCgcaGCCGUcuGGUGCuccGUCa -3'
miRNA:   3'- cCUGGAGCGa--UGGCAcuCCGUG---CAGc -5'
24740 3' -56.6 NC_005264.1 + 101548 0.66 0.910298
Target:  5'- cGGCCUUGaagGCCGUGAugacugcauGCACGUCc -3'
miRNA:   3'- cCUGGAGCga-UGGCACUc--------CGUGCAGc -5'
24740 3' -56.6 NC_005264.1 + 82457 0.66 0.904302
Target:  5'- gGGGCCUCGUU------GGGUACGUCGa -3'
miRNA:   3'- -CCUGGAGCGAuggcacUCCGUGCAGC- -5'
24740 3' -56.6 NC_005264.1 + 47210 0.66 0.898083
Target:  5'- gGGGCCaCG--GCCGUcGAuGGCugGUCGg -3'
miRNA:   3'- -CCUGGaGCgaUGGCA-CU-CCGugCAGC- -5'
24740 3' -56.6 NC_005264.1 + 60529 0.66 0.898083
Target:  5'- -aACCUaCGCaUGCCGgccGAGGUGuCGUCGa -3'
miRNA:   3'- ccUGGA-GCG-AUGGCa--CUCCGU-GCAGC- -5'
24740 3' -56.6 NC_005264.1 + 125171 0.67 0.894245
Target:  5'- aGGGCCgcgCGCccgucgcgcaucgcgUGCacgauGUGGGGCACGcCGg -3'
miRNA:   3'- -CCUGGa--GCG---------------AUGg----CACUCCGUGCaGC- -5'
24740 3' -56.6 NC_005264.1 + 6144 0.67 0.894245
Target:  5'- aGGGCCgcgCGCccgucgcgcaucgcgUGCacgauGUGGGGCACGcCGg -3'
miRNA:   3'- -CCUGGa--GCG---------------AUGg----CACUCCGUGCaGC- -5'
24740 3' -56.6 NC_005264.1 + 87633 0.67 0.891642
Target:  5'- aGGGCCgauGCaGCCGcgUGGGGCGCGg-- -3'
miRNA:   3'- -CCUGGag-CGaUGGC--ACUCCGUGCagc -5'
24740 3' -56.6 NC_005264.1 + 109263 0.67 0.871031
Target:  5'- ---aCUCGCcACgCGUcGGGCGCGUCGu -3'
miRNA:   3'- ccugGAGCGaUG-GCAcUCCGUGCAGC- -5'
24740 3' -56.6 NC_005264.1 + 70144 0.67 0.871031
Target:  5'- cGugCUUGCUGCCGcGGcGGCGCcUCa -3'
miRNA:   3'- cCugGAGCGAUGGCaCU-CCGUGcAGc -5'
24740 3' -56.6 NC_005264.1 + 154924 0.67 0.871031
Target:  5'- uGGACgCgcgCGUUGCuagccagagCGUGGGGgACGUCGu -3'
miRNA:   3'- -CCUG-Ga--GCGAUG---------GCACUCCgUGCAGC- -5'
24740 3' -56.6 NC_005264.1 + 127385 0.67 0.870312
Target:  5'- cGACCgUCGCUgaugcuuaccggcGCCG-GAcgcGGCGCGUUGa -3'
miRNA:   3'- cCUGG-AGCGA-------------UGGCaCU---CCGUGCAGC- -5'
24740 3' -56.6 NC_005264.1 + 8358 0.67 0.870312
Target:  5'- cGACCgUCGCUgaugcuuaccggcGCCG-GAcgcGGCGCGUUGa -3'
miRNA:   3'- cCUGG-AGCGA-------------UGGCaCU---CCGUGCAGC- -5'
24740 3' -56.6 NC_005264.1 + 19941 0.67 0.863745
Target:  5'- aGGACgcaUCGUcGCCGUGAuggagaaaGGCGCGgcgCGa -3'
miRNA:   3'- -CCUGg--AGCGaUGGCACU--------CCGUGCa--GC- -5'
24740 3' -56.6 NC_005264.1 + 131448 0.68 0.856259
Target:  5'- cGGCC-CGCUACgUGcuugGAGGCGCGgugCGg -3'
miRNA:   3'- cCUGGaGCGAUG-GCa---CUCCGUGCa--GC- -5'
24740 3' -56.6 NC_005264.1 + 109969 0.68 0.856259
Target:  5'- --cCCUCGCUcGCgCGUGu-GCACGUCGu -3'
miRNA:   3'- ccuGGAGCGA-UG-GCACucCGUGCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.