Results 1 - 20 of 150 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24741 | 3' | -62.9 | NC_005264.1 | + | 32910 | 0.66 | 0.64949 |
Target: 5'- gCGU-UCUCGAUCgcgcaggggUCGCGGGgCGCCGCg -3' miRNA: 3'- -GCAcGGAGCUGG---------GGCGUCCgGUGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 26073 | 0.66 | 0.609865 |
Target: 5'- uGUGCCUagccCGGCgCUguuuuuggccauaGCuaaacuGGCCACCGCg -3' miRNA: 3'- gCACGGA----GCUGgGG-------------CGu-----CCGGUGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 87714 | 0.66 | 0.64949 |
Target: 5'- -aUGCCgaGGCCuuGguGGCUuucaucGCCGCa -3' miRNA: 3'- gcACGGagCUGGggCguCCGG------UGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 121511 | 0.66 | 0.659141 |
Target: 5'- -cUGCUUCGACgauggUCgGCGGGCC-UCGCg -3' miRNA: 3'- gcACGGAGCUG-----GGgCGUCCGGuGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 86202 | 0.66 | 0.662996 |
Target: 5'- uCG-GCCUCGAUggucuucucugcgugCUCGUGGGCgGCCGa -3' miRNA: 3'- -GCaCGGAGCUG---------------GGGCGUCCGgUGGCg -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 65448 | 0.66 | 0.630157 |
Target: 5'- --cGUUUUGACUCUGCAcGGCCugCGg -3' miRNA: 3'- gcaCGGAGCUGGGGCGU-CCGGugGCg -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 68251 | 0.66 | 0.639826 |
Target: 5'- -aUGCC-CG-CgCCGCGGGCgGCCuGCu -3' miRNA: 3'- gcACGGaGCuGgGGCGUCCGgUGG-CG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 90973 | 0.66 | 0.64949 |
Target: 5'- --cGCCcgCGugCCguCGCGGaacaccGCCGCCGCg -3' miRNA: 3'- gcaCGGa-GCugGG--GCGUC------CGGUGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 42346 | 0.66 | 0.64949 |
Target: 5'- --gGCCUCGcCCCCGCca-CCuacuCCGCg -3' miRNA: 3'- gcaCGGAGCuGGGGCGuccGGu---GGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 117176 | 0.66 | 0.61083 |
Target: 5'- aCGUGCUUC-ACUgCGCuuggcgccuaGCCGCCGCg -3' miRNA: 3'- -GCACGGAGcUGGgGCGuc--------CGGUGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 146769 | 0.66 | 0.659141 |
Target: 5'- aGUGCUcgcagUGugUUCGCAGGUCauauaGCCGCu -3' miRNA: 3'- gCACGGa----GCugGGGCGUCCGG-----UGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 122789 | 0.66 | 0.61083 |
Target: 5'- --cGCCggGGCgCUGCGGGCCcuuggucgaccGCCGCc -3' miRNA: 3'- gcaCGGagCUGgGGCGUCCGG-----------UGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 119263 | 0.66 | 0.61083 |
Target: 5'- cCGUGCCU-GGCgCCacagcgagGCGGGCCGCuCGa -3' miRNA: 3'- -GCACGGAgCUGgGG--------CGUCCGGUG-GCg -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 85917 | 0.66 | 0.62049 |
Target: 5'- gCGcUGaCUCuGACCgCGUcugAGGCCACCGUc -3' miRNA: 3'- -GC-ACgGAG-CUGGgGCG---UCCGGUGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 122032 | 0.66 | 0.659141 |
Target: 5'- --aGUCUCggcGACCCCGCGgcaagcGGCUccgcucucggcGCCGCg -3' miRNA: 3'- gcaCGGAG---CUGGGGCGU------CCGG-----------UGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 126330 | 0.66 | 0.64949 |
Target: 5'- --cGCC-CG-CCUCGUcgAGGCCGCgCGCu -3' miRNA: 3'- gcaCGGaGCuGGGGCG--UCCGGUG-GCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 67463 | 0.66 | 0.639826 |
Target: 5'- gCG-GCCagcUCGugaaaCCCGaggcCGGGCCGCCGCc -3' miRNA: 3'- -GCaCGG---AGCug---GGGC----GUCCGGUGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 2484 | 0.66 | 0.659141 |
Target: 5'- -cUGCUUCGACgauggUCgGCGGGCC-UCGCg -3' miRNA: 3'- gcACGGAGCUG-----GGgCGUCCGGuGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 62350 | 0.66 | 0.62049 |
Target: 5'- --cGCC-CGcaACCCCuccaggGCccuGGCCGCCGCg -3' miRNA: 3'- gcaCGGaGC--UGGGG------CGu--CCGGUGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 114134 | 0.66 | 0.62049 |
Target: 5'- --cGCCUCaucUCCCGCGaGCgACCGCg -3' miRNA: 3'- gcaCGGAGcu-GGGGCGUcCGgUGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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