miRNA display CGI


Results 1 - 20 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24741 3' -62.9 NC_005264.1 + 161789 0.76 0.168476
Target:  5'- aCGUGCCgagCGACCCgGguGGCCaguuacgGCCGg -3'
miRNA:   3'- -GCACGGa--GCUGGGgCguCCGG-------UGGCg -5'
24741 3' -62.9 NC_005264.1 + 161628 0.67 0.601185
Target:  5'- uGUGCa---ACCCCGCA-GCCaugGCCGCg -3'
miRNA:   3'- gCACGgagcUGGGGCGUcCGG---UGGCG- -5'
24741 3' -62.9 NC_005264.1 + 160418 0.71 0.339355
Target:  5'- aCGUGUCcgCGGCCUCcgcuuucuuccuagGCAGGCCGgCGCc -3'
miRNA:   3'- -GCACGGa-GCUGGGG--------------CGUCCGGUgGCG- -5'
24741 3' -62.9 NC_005264.1 + 159019 0.68 0.525235
Target:  5'- ---uCCUgCGGCCCCGCccGGGCCcgaacucgcggACCGCc -3'
miRNA:   3'- gcacGGA-GCUGGGGCG--UCCGG-----------UGGCG- -5'
24741 3' -62.9 NC_005264.1 + 158947 0.76 0.172964
Target:  5'- cCGUGUagccagagaaCUCGACCCCGggugGGGCCACgGCg -3'
miRNA:   3'- -GCACG----------GAGCUGGGGCg---UCCGGUGgCG- -5'
24741 3' -62.9 NC_005264.1 + 158741 0.68 0.506773
Target:  5'- ---cCCUCGGCCCCGUcGuGCCgcgacGCCGCc -3'
miRNA:   3'- gcacGGAGCUGGGGCGuC-CGG-----UGGCG- -5'
24741 3' -62.9 NC_005264.1 + 158560 0.67 0.562867
Target:  5'- aCGUGCuCUCugccgccGCCCCGC-GGUUcCCGCg -3'
miRNA:   3'- -GCACG-GAGc------UGGGGCGuCCGGuGGCG- -5'
24741 3' -62.9 NC_005264.1 + 158501 0.67 0.562867
Target:  5'- aCGcGCgCUCaGCCgCCagggGCAGGCCugCGCu -3'
miRNA:   3'- -GCaCG-GAGcUGG-GG----CGUCCGGugGCG- -5'
24741 3' -62.9 NC_005264.1 + 157952 0.68 0.497646
Target:  5'- gCGUgGCCUCGaACUCCGCGuGUCgcuuGCCGCc -3'
miRNA:   3'- -GCA-CGGAGC-UGGGGCGUcCGG----UGGCG- -5'
24741 3' -62.9 NC_005264.1 + 157810 0.7 0.410999
Target:  5'- aCGUGCCUCGucccggugacguACUCCGC-GGCgACCccgGCg -3'
miRNA:   3'- -GCACGGAGC------------UGGGGCGuCCGgUGG---CG- -5'
24741 3' -62.9 NC_005264.1 + 154840 0.69 0.43603
Target:  5'- --cGCCUcugcCGGCCCCGCAauGGCgGCCcguGCa -3'
miRNA:   3'- gcaCGGA----GCUGGGGCGU--CCGgUGG---CG- -5'
24741 3' -62.9 NC_005264.1 + 153021 0.67 0.553382
Target:  5'- aCGUGCggCGGCCCaUGUA-GCCgGCCGCg -3'
miRNA:   3'- -GCACGgaGCUGGG-GCGUcCGG-UGGCG- -5'
24741 3' -62.9 NC_005264.1 + 152751 0.68 0.525235
Target:  5'- aCG-GCCgCGAugcCCCCgGCGGGagauuCCGCCGCg -3'
miRNA:   3'- -GCaCGGaGCU---GGGG-CGUCC-----GGUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 151780 0.67 0.591561
Target:  5'- gCGgGUaCUUG-CCCCGcCAGGCC-CCGCc -3'
miRNA:   3'- -GCaCG-GAGCuGGGGC-GUCCGGuGGCG- -5'
24741 3' -62.9 NC_005264.1 + 149372 0.69 0.452331
Target:  5'- uGUcCCcCGAguCCCCGCAGgagccccuucggcGCCGCCGCg -3'
miRNA:   3'- gCAcGGaGCU--GGGGCGUC-------------CGGUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 147593 0.71 0.374401
Target:  5'- aGUGCCcccUCGAgCCCgcguugaacuuagagCGCAGGaUCGCCGCg -3'
miRNA:   3'- gCACGG---AGCU-GGG---------------GCGUCC-GGUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 146769 0.66 0.659141
Target:  5'- aGUGCUcgcagUGugUUCGCAGGUCauauaGCCGCu -3'
miRNA:   3'- gCACGGa----GCugGGGCGUCCGG-----UGGCG- -5'
24741 3' -62.9 NC_005264.1 + 146351 1.11 0.000601
Target:  5'- gCGUGCCUCGACCCCGCAGGCCACCGCg -3'
miRNA:   3'- -GCACGGAGCUGGGGCGUCCGGUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 145165 0.66 0.638859
Target:  5'- gCG-GCCUCGGCUgCGCcugAGGCUACgauauacaauuggCGCg -3'
miRNA:   3'- -GCaCGGAGCUGGgGCG---UCCGGUG-------------GCG- -5'
24741 3' -62.9 NC_005264.1 + 144776 0.69 0.444568
Target:  5'- -aUGCCcgCGcGCCCuggcuCGCGGcGCCGCCGCu -3'
miRNA:   3'- gcACGGa-GC-UGGG-----GCGUC-CGGUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.