Results 1 - 20 of 150 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24741 | 3' | -62.9 | NC_005264.1 | + | 86202 | 0.66 | 0.662996 |
Target: 5'- uCG-GCCUCGAUggucuucucugcgugCUCGUGGGCgGCCGa -3' miRNA: 3'- -GCaCGGAGCUG---------------GGGCGUCCGgUGGCg -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 69000 | 0.66 | 0.61083 |
Target: 5'- aGUgGCCcgCGGCCCUGUc-GCCAUCGUa -3' miRNA: 3'- gCA-CGGa-GCUGGGGCGucCGGUGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 99194 | 0.67 | 0.601185 |
Target: 5'- aCGUGgg--GuCCUCGCAGGCCuCCGCg -3' miRNA: 3'- -GCACggagCuGGGGCGUCCGGuGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 42763 | 0.76 | 0.168476 |
Target: 5'- aCGUGCCgagCGACCCgGguGGCCaguuacgGCCGg -3' miRNA: 3'- -GCACGGa--GCUGGGgCguCCGG-------UGGCg -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 90973 | 0.66 | 0.64949 |
Target: 5'- --cGCCcgCGugCCguCGCGGaacaccGCCGCCGCg -3' miRNA: 3'- gcaCGGa-GCugGG--GCGUC------CGGUGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 126330 | 0.66 | 0.64949 |
Target: 5'- --cGCC-CG-CCUCGUcgAGGCCGCgCGCu -3' miRNA: 3'- gcaCGGaGCuGGGGCG--UCCGGUG-GCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 14183 | 0.66 | 0.643692 |
Target: 5'- --cGCCUCGguggcgaucgccgucGCCCCaucGGCCACgGCg -3' miRNA: 3'- gcaCGGAGC---------------UGGGGcguCCGGUGgCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 121190 | 0.66 | 0.639826 |
Target: 5'- aCGU-CCUUaGACCCgGCcGcGCUGCCGCa -3' miRNA: 3'- -GCAcGGAG-CUGGGgCGuC-CGGUGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 76954 | 0.66 | 0.630157 |
Target: 5'- aCGagGCCUuucaCGGCCUCGguGGUCACaaGCa -3' miRNA: 3'- -GCa-CGGA----GCUGGGGCguCCGGUGg-CG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 236 | 0.66 | 0.61083 |
Target: 5'- cCGUGCCU-GGCgCCacagcgagGCGGGCCGCuCGa -3' miRNA: 3'- -GCACGGAgCUGgGG--------CGUCCGGUG-GCg -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 131648 | 0.66 | 0.62049 |
Target: 5'- --cGCCUCGGuCUgCGguGcCCGCCGCc -3' miRNA: 3'- gcaCGGAGCU-GGgGCguCcGGUGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 145165 | 0.66 | 0.638859 |
Target: 5'- gCG-GCCUCGGCUgCGCcugAGGCUACgauauacaauuggCGCg -3' miRNA: 3'- -GCaCGGAGCUGGgGCG---UCCGGUG-------------GCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 2484 | 0.66 | 0.659141 |
Target: 5'- -cUGCUUCGACgauggUCgGCGGGCC-UCGCg -3' miRNA: 3'- gcACGGAGCUG-----GGgCGUCCGGuGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 128207 | 0.66 | 0.61083 |
Target: 5'- cCGgugGCCgCGAacaCCCCGCGGGCCuugaacaaACgGUa -3' miRNA: 3'- -GCa--CGGaGCU---GGGGCGUCCGG--------UGgCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 146769 | 0.66 | 0.659141 |
Target: 5'- aGUGCUcgcagUGugUUCGCAGGUCauauaGCCGCu -3' miRNA: 3'- gCACGGa----GCugGGGCGUCCGG-----UGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 109948 | 0.66 | 0.639826 |
Target: 5'- --cGCCgaccuuaCGGCCCUGCugauGGCaggUACCGCg -3' miRNA: 3'- gcaCGGa------GCUGGGGCGu---CCG---GUGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 3763 | 0.66 | 0.61083 |
Target: 5'- --cGCCggGGCgCUGCGGGCCcuuggucgaccGCCGCc -3' miRNA: 3'- gcaCGGagCUGgGGCGUCCGG-----------UGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 75900 | 0.67 | 0.601185 |
Target: 5'- -aUGCCUCGAUCaCGUAGaaaGCCACUGg -3' miRNA: 3'- gcACGGAGCUGGgGCGUC---CGGUGGCg -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 122032 | 0.66 | 0.659141 |
Target: 5'- --aGUCUCggcGACCCCGCGgcaagcGGCUccgcucucggcGCCGCg -3' miRNA: 3'- gcaCGGAG---CUGGGGCGU------CCGG-----------UGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 75226 | 0.66 | 0.64949 |
Target: 5'- -uUGCCUCuGGCgCgGcCAGGUCGuCCGCg -3' miRNA: 3'- gcACGGAG-CUGgGgC-GUCCGGU-GGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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