miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24743 3' -52.9 NC_005264.1 + 159558 0.66 0.979087
Target:  5'- aGCUCacGACUCugGCGCugaaugccCACCcACc -3'
miRNA:   3'- gCGAGcuUUGAGugCGCGu-------GUGGaUG- -5'
24743 3' -52.9 NC_005264.1 + 159209 0.66 0.981285
Target:  5'- uCGCgaCGAAugUCAgCGCGCcCGCCcucGCg -3'
miRNA:   3'- -GCGa-GCUUugAGU-GCGCGuGUGGa--UG- -5'
24743 3' -52.9 NC_005264.1 + 157424 0.68 0.941149
Target:  5'- aCGC-CGAGACagaugC-CGCGUACGcCCUGCu -3'
miRNA:   3'- -GCGaGCUUUGa----GuGCGCGUGU-GGAUG- -5'
24743 3' -52.9 NC_005264.1 + 156796 0.67 0.958093
Target:  5'- uGCUUGAGACUCGCcuuCGCGCCg-- -3'
miRNA:   3'- gCGAGCUUUGAGUGcgcGUGUGGaug -5'
24743 3' -52.9 NC_005264.1 + 154123 0.7 0.881693
Target:  5'- aGC-CGAAACggcggcCACGCGCGCGCagaGCg -3'
miRNA:   3'- gCGaGCUUUGa-----GUGCGCGUGUGga-UG- -5'
24743 3' -52.9 NC_005264.1 + 154040 0.67 0.965162
Target:  5'- gCGCUCGAAGagga-GCGCugGCCg-- -3'
miRNA:   3'- -GCGAGCUUUgagugCGCGugUGGaug -5'
24743 3' -52.9 NC_005264.1 + 152255 0.68 0.933285
Target:  5'- uCGCggucgCGGAcuuggccaggauuuuGCUUAUGuUGCGCGCCUGCg -3'
miRNA:   3'- -GCGa----GCUU---------------UGAGUGC-GCGUGUGGAUG- -5'
24743 3' -52.9 NC_005264.1 + 152125 0.67 0.958093
Target:  5'- cCGCUUGcuuGCUCgcugACGCGCAUACUg-- -3'
miRNA:   3'- -GCGAGCuu-UGAG----UGCGCGUGUGGaug -5'
24743 3' -52.9 NC_005264.1 + 149856 0.73 0.719617
Target:  5'- uGCUCGAAcggGCUCGCGUcgucgucggcggcgGCGCGCCg-- -3'
miRNA:   3'- gCGAGCUU---UGAGUGCG--------------CGUGUGGaug -5'
24743 3' -52.9 NC_005264.1 + 148873 0.66 0.981285
Target:  5'- aGCguaCGcauCUUugGCGCGCGCUUAUc -3'
miRNA:   3'- gCGa--GCuuuGAGugCGCGUGUGGAUG- -5'
24743 3' -52.9 NC_005264.1 + 148296 0.66 0.979087
Target:  5'- -uCUgGAGACcgcgCGCGUGCGCGCCg-- -3'
miRNA:   3'- gcGAgCUUUGa---GUGCGCGUGUGGaug -5'
24743 3' -52.9 NC_005264.1 + 147077 0.74 0.671498
Target:  5'- uCGCcCGGAgccacGCUCGCGCGCACACa--- -3'
miRNA:   3'- -GCGaGCUU-----UGAGUGCGCGUGUGgaug -5'
24743 3' -52.9 NC_005264.1 + 146914 1.11 0.004209
Target:  5'- aCGCUCGAAACUCACGCGCACACCUACa -3'
miRNA:   3'- -GCGAGCUUUGAGUGCGCGUGUGGAUG- -5'
24743 3' -52.9 NC_005264.1 + 146326 0.66 0.976704
Target:  5'- aGCUauccuGACUCucgGCGUGCGCGCCgaaugACg -3'
miRNA:   3'- gCGAgcu--UUGAG---UGCGCGUGUGGa----UG- -5'
24743 3' -52.9 NC_005264.1 + 143734 0.66 0.974127
Target:  5'- uGCUCGu--CUC-CGCGC-CGCCg-- -3'
miRNA:   3'- gCGAGCuuuGAGuGCGCGuGUGGaug -5'
24743 3' -52.9 NC_005264.1 + 142861 0.67 0.965162
Target:  5'- gCGgUCGGuuuguugcgucGACUCGCGC-CGCGCCUu- -3'
miRNA:   3'- -GCgAGCU-----------UUGAGUGCGcGUGUGGAug -5'
24743 3' -52.9 NC_005264.1 + 140818 0.73 0.712535
Target:  5'- aGC-CGAAcGCUCGCGgGCAaaaaACCUACg -3'
miRNA:   3'- gCGaGCUU-UGAGUGCgCGUg---UGGAUG- -5'
24743 3' -52.9 NC_005264.1 + 139561 0.75 0.634093
Target:  5'- gCGCUCGcuGCaCGCGCGCGCgaaauagacaacgugACCUGCu -3'
miRNA:   3'- -GCGAGCuuUGaGUGCGCGUG---------------UGGAUG- -5'
24743 3' -52.9 NC_005264.1 + 139414 0.7 0.859242
Target:  5'- -aCUCGAGACgggcaccgCugGCGUACGCgUGCu -3'
miRNA:   3'- gcGAGCUUUGa-------GugCGCGUGUGgAUG- -5'
24743 3' -52.9 NC_005264.1 + 136465 0.72 0.771768
Target:  5'- gCGCUCaGAGACggCGC-CGCGCAgCCUGCc -3'
miRNA:   3'- -GCGAG-CUUUGa-GUGcGCGUGU-GGAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.