miRNA display CGI


Results 21 - 40 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24746 5' -62.1 NC_005264.1 + 120539 0.66 0.646454
Target:  5'- ----cGGCAGCCCuGCGACGGCccCGg -3'
miRNA:   3'- ccucuUCGUCGGGcCGCUGCCGccGC- -5'
24746 5' -62.1 NC_005264.1 + 155250 0.66 0.646454
Target:  5'- uGAGGaagcaucuccgcAGCGGCgCGGgguaGGCGGCGGgGa -3'
miRNA:   3'- cCUCU------------UCGUCGgGCCg---CUGCCGCCgC- -5'
24746 5' -62.1 NC_005264.1 + 34069 0.66 0.682242
Target:  5'- cGAGAAGaaggaAGCCCGcaguuugccGCGGCGggcacaauggcucaGCGGCGc -3'
miRNA:   3'- cCUCUUCg----UCGGGC---------CGCUGC--------------CGCCGC- -5'
24746 5' -62.1 NC_005264.1 + 134955 0.66 0.688966
Target:  5'- cGAGAcGCuGGCCagacacgacaaaaaGGCGGCGGCgcauugGGCGg -3'
miRNA:   3'- cCUCUuCG-UCGGg-------------CCGCUGCCG------CCGC- -5'
24746 5' -62.1 NC_005264.1 + 159381 0.67 0.59793
Target:  5'- -uGGAuGCGGCaCCgGGCGccACgGGCGGCGg -3'
miRNA:   3'- ccUCUuCGUCG-GG-CCGC--UG-CCGCCGC- -5'
24746 5' -62.1 NC_005264.1 + 35581 0.67 0.616345
Target:  5'- gGGGGGAGCuGCUgcggcuuCGGcCGAUGGCcGCGu -3'
miRNA:   3'- -CCUCUUCGuCGG-------GCC-GCUGCCGcCGC- -5'
24746 5' -62.1 NC_005264.1 + 40950 0.66 0.656155
Target:  5'- cGGucGAucGCAGCCgcagcgGGCGACGGC-GCGa -3'
miRNA:   3'- -CCu-CUu-CGUCGGg-----CCGCUGCCGcCGC- -5'
24746 5' -62.1 NC_005264.1 + 129597 0.66 0.694714
Target:  5'- ---cAGGC-GCUgCGGCG-CGGCGGCGa -3'
miRNA:   3'- ccucUUCGuCGG-GCCGCuGCCGCCGC- -5'
24746 5' -62.1 NC_005264.1 + 80612 0.67 0.616345
Target:  5'- gGGGGGAGCguucuugGGCCCcgaGGaCGAUGGaCGcGCGg -3'
miRNA:   3'- -CCUCUUCG-------UCGGG---CC-GCUGCC-GC-CGC- -5'
24746 5' -62.1 NC_005264.1 + 110368 0.66 0.694714
Target:  5'- cGAGGAGUAuGCuaauaCCGcCGACGGCgGGCGc -3'
miRNA:   3'- cCUCUUCGU-CG-----GGCcGCUGCCG-CCGC- -5'
24746 5' -62.1 NC_005264.1 + 39081 0.66 0.656155
Target:  5'- -cGGAcGcCGGCUCGGCgGGCaGCGGCGu -3'
miRNA:   3'- ccUCUuC-GUCGGGCCG-CUGcCGCCGC- -5'
24746 5' -62.1 NC_005264.1 + 45386 0.67 0.627027
Target:  5'- aGGAGAA--GGCgCGGCaaacgaugGAgGGCGGCGc -3'
miRNA:   3'- -CCUCUUcgUCGgGCCG--------CUgCCGCCGC- -5'
24746 5' -62.1 NC_005264.1 + 7260 0.66 0.665839
Target:  5'- cGGAGGucGGC-GCCaGGacgaaGACGGCGGgGc -3'
miRNA:   3'- -CCUCU--UCGuCGGgCCg----CUGCCGCCgC- -5'
24746 5' -62.1 NC_005264.1 + 110312 0.66 0.675498
Target:  5'- aGAGAGGacacuaacacCAGCCUGuuCGACGGCGuGCa -3'
miRNA:   3'- cCUCUUC----------GUCGGGCc-GCUGCCGC-CGc -5'
24746 5' -62.1 NC_005264.1 + 4180 0.66 0.685126
Target:  5'- uGGGGAAGCggagGGUCCGaGgGACGGgaGGUu -3'
miRNA:   3'- -CCUCUUCG----UCGGGC-CgCUGCCg-CCGc -5'
24746 5' -62.1 NC_005264.1 + 96249 0.66 0.686087
Target:  5'- --cGgcGCAGCCCaGCGAgagccuguaccagcaGGUGGCGg -3'
miRNA:   3'- ccuCuuCGUCGGGcCGCUg--------------CCGCCGC- -5'
24746 5' -62.1 NC_005264.1 + 2886 0.67 0.588268
Target:  5'- cGGGgcGCGGCgCGGCGgggaggGCGaCGGCGa -3'
miRNA:   3'- cCUCuuCGUCGgGCCGC------UGCcGCCGC- -5'
24746 5' -62.1 NC_005264.1 + 8290 0.67 0.59793
Target:  5'- ---aAGGC-GCCCgugGGCGACGGgGGCa -3'
miRNA:   3'- ccucUUCGuCGGG---CCGCUGCCgCCGc -5'
24746 5' -62.1 NC_005264.1 + 4584 0.67 0.607615
Target:  5'- cGGGAAcGCAGgcccucCCCGccaGCGccGCGGCGGCGu -3'
miRNA:   3'- cCUCUU-CGUC------GGGC---CGC--UGCCGCCGC- -5'
24746 5' -62.1 NC_005264.1 + 111409 0.67 0.607615
Target:  5'- uGAGGA-CGGagggGGCGACGGCGGCu -3'
miRNA:   3'- cCUCUUcGUCggg-CCGCUGCCGCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.