miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24750 3' -62.6 NC_005264.1 + 48097 0.66 0.662226
Target:  5'- gGCCGCGCGGGuuCUGCacgCGcGCGGc- -3'
miRNA:   3'- gCGGCGUGUCCugGGCGa--GC-CGCUca -5'
24750 3' -62.6 NC_005264.1 + 10159 0.66 0.652522
Target:  5'- -aCCGCGucCAGGGCC---UCGGCGAGUa -3'
miRNA:   3'- gcGGCGU--GUCCUGGgcgAGCCGCUCA- -5'
24750 3' -62.6 NC_005264.1 + 66166 0.66 0.649607
Target:  5'- uCGCUagaagaugugaugaGCGCAccGCCCGCaUCGGCGGGc -3'
miRNA:   3'- -GCGG--------------CGUGUccUGGGCG-AGCCGCUCa -5'
24750 3' -62.6 NC_005264.1 + 38364 0.66 0.642803
Target:  5'- gGgCGguUAGGACCUcCUcCGGCGAGa -3'
miRNA:   3'- gCgGCguGUCCUGGGcGA-GCCGCUCa -5'
24750 3' -62.6 NC_005264.1 + 157391 0.66 0.642803
Target:  5'- gGgCGguUAGGACCUcCUcCGGCGAGa -3'
miRNA:   3'- gCgGCguGUCCUGGGcGA-GCCGCUCa -5'
24750 3' -62.6 NC_005264.1 + 27749 0.66 0.642803
Target:  5'- cCGCCGgGaGGGugCCGaucacucuguaCUUGGCGAGa -3'
miRNA:   3'- -GCGGCgUgUCCugGGC-----------GAGCCGCUCa -5'
24750 3' -62.6 NC_005264.1 + 129007 0.66 0.632103
Target:  5'- gCGgCGCGCAGGGgaauagcuacagcCuuGC-CGGCGAGc -3'
miRNA:   3'- -GCgGCGUGUCCU-------------GggCGaGCCGCUCa -5'
24750 3' -62.6 NC_005264.1 + 122624 0.66 0.623349
Target:  5'- gCGUCGUggaauacauGCAGG-CCCGCUCGGUc--- -3'
miRNA:   3'- -GCGGCG---------UGUCCuGGGCGAGCCGcuca -5'
24750 3' -62.6 NC_005264.1 + 128979 0.66 0.623349
Target:  5'- aCGCCgGCgagggacuGCcGGACCCGUgCGGCGAu- -3'
miRNA:   3'- -GCGG-CG--------UGuCCUGGGCGaGCCGCUca -5'
24750 3' -62.6 NC_005264.1 + 16861 0.66 0.623349
Target:  5'- cCGCCGCGCAGuucguAUUCGCgcCGGCGAa- -3'
miRNA:   3'- -GCGGCGUGUCc----UGGGCGa-GCCGCUca -5'
24750 3' -62.6 NC_005264.1 + 53074 0.66 0.622376
Target:  5'- gGCCGCggacccaGCGGGagugucuaaGCUgguggacaaggCGCUCGGCGAGg -3'
miRNA:   3'- gCGGCG-------UGUCC---------UGG-----------GCGAGCCGCUCa -5'
24750 3' -62.6 NC_005264.1 + 45768 0.66 0.613627
Target:  5'- -cCUGCGCGGGGCgCGCggagUGGgGAGUc -3'
miRNA:   3'- gcGGCGUGUCCUGgGCGa---GCCgCUCA- -5'
24750 3' -62.6 NC_005264.1 + 63057 0.66 0.613627
Target:  5'- gGCCGCcuugaucuCGGucUCCaGCUCGGCGAGg -3'
miRNA:   3'- gCGGCGu-------GUCcuGGG-CGAGCCGCUCa -5'
24750 3' -62.6 NC_005264.1 + 96532 0.66 0.613627
Target:  5'- aCGCCGCGCaacaggagugcaGGGACCCua-CGGgGGGg -3'
miRNA:   3'- -GCGGCGUG------------UCCUGGGcgaGCCgCUCa -5'
24750 3' -62.6 NC_005264.1 + 5279 0.66 0.612656
Target:  5'- gGCCGgACGGcggggcggcggcuGACCCGUggGGCGGGc -3'
miRNA:   3'- gCGGCgUGUC-------------CUGGGCGagCCGCUCa -5'
24750 3' -62.6 NC_005264.1 + 124306 0.66 0.612656
Target:  5'- gGCCGgACGGcggggcggcggcuGACCCGUggGGCGGGc -3'
miRNA:   3'- gCGGCgUGUC-------------CUGGGCGagCCGCUCa -5'
24750 3' -62.6 NC_005264.1 + 51777 0.67 0.603918
Target:  5'- aGCuCGCGCGGcGGCacuuCGUcCGGCGAGUc -3'
miRNA:   3'- gCG-GCGUGUC-CUGg---GCGaGCCGCUCA- -5'
24750 3' -62.6 NC_005264.1 + 56819 0.67 0.603918
Target:  5'- gCGCUGCGCGGcGGCCCuaGCUagCGGCucGUg -3'
miRNA:   3'- -GCGGCGUGUC-CUGGG--CGA--GCCGcuCA- -5'
24750 3' -62.6 NC_005264.1 + 62922 0.67 0.603918
Target:  5'- aGCCGCGCGGG-CuuGCgCGGCc--- -3'
miRNA:   3'- gCGGCGUGUCCuGggCGaGCCGcuca -5'
24750 3' -62.6 NC_005264.1 + 99920 0.67 0.594229
Target:  5'- gGCCGCGCAa-GCCCGCgCGGCu--- -3'
miRNA:   3'- gCGGCGUGUccUGGGCGaGCCGcuca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.