miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24751 3' -52.9 NC_005264.1 + 153987 1.11 0.004841
Target:  5'- gCGAGUACUUAGAGCGACGCUCGCGACg -3'
miRNA:   3'- -GCUCAUGAAUCUCGCUGCGAGCGCUG- -5'
24751 3' -52.9 NC_005264.1 + 34960 1.11 0.004841
Target:  5'- gCGAGUACUUAGAGCGACGCUCGCGACg -3'
miRNA:   3'- -GCUCAUGAAUCUCGCUGCGAGCGCUG- -5'
24751 3' -52.9 NC_005264.1 + 103706 0.72 0.772457
Target:  5'- uGAGgGCcagUGGAGCGGCGg-CGCGGCa -3'
miRNA:   3'- gCUCaUGa--AUCUCGCUGCgaGCGCUG- -5'
24751 3' -52.9 NC_005264.1 + 96877 0.72 0.781884
Target:  5'- aCGAGUAUUgaagaUGGcauGGCGGCGCgcgagggCGCGGCa -3'
miRNA:   3'- -GCUCAUGA-----AUC---UCGCUGCGa------GCGCUG- -5'
24751 3' -52.9 NC_005264.1 + 86756 0.72 0.800316
Target:  5'- ----cGCgcccgUAGAGCcgucGACGCUCGCGGCg -3'
miRNA:   3'- gcucaUGa----AUCUCG----CUGCGAGCGCUG- -5'
24751 3' -52.9 NC_005264.1 + 22843 0.71 0.82677
Target:  5'- aCGGGUACggacGGGCGAgGCcgCGCGAa -3'
miRNA:   3'- -GCUCAUGaau-CUCGCUgCGa-GCGCUg -5'
24751 3' -52.9 NC_005264.1 + 67005 0.71 0.82677
Target:  5'- gCGAGUGCUgccuggacGGAGCGGCGgcCUUGCG-Ca -3'
miRNA:   3'- -GCUCAUGAa-------UCUCGCUGC--GAGCGCuG- -5'
24751 3' -52.9 NC_005264.1 + 116418 0.71 0.835236
Target:  5'- uCGAGcGC--AGGGCGGCGUgcagccUCGCGGCg -3'
miRNA:   3'- -GCUCaUGaaUCUCGCUGCG------AGCGCUG- -5'
24751 3' -52.9 NC_005264.1 + 146419 0.71 0.835236
Target:  5'- gCGGGUGCUgaUGGcuCGAUGC-CGCGGCu -3'
miRNA:   3'- -GCUCAUGA--AUCucGCUGCGaGCGCUG- -5'
24751 3' -52.9 NC_005264.1 + 124272 0.71 0.850794
Target:  5'- uCGGGUACguuUAGAGCGccgggagGCGagUCGCGGCc -3'
miRNA:   3'- -GCUCAUGa--AUCUCGC-------UGCg-AGCGCUG- -5'
24751 3' -52.9 NC_005264.1 + 5245 0.71 0.850794
Target:  5'- uCGGGUACguuUAGAGCGccgggagGCGagUCGCGGCc -3'
miRNA:   3'- -GCUCAUGa--AUCUCGC-------UGCg-AGCGCUG- -5'
24751 3' -52.9 NC_005264.1 + 127840 0.7 0.895571
Target:  5'- -----uCUUcGAGCGcCGCUCGCGGCa -3'
miRNA:   3'- gcucauGAAuCUCGCuGCGAGCGCUG- -5'
24751 3' -52.9 NC_005264.1 + 8814 0.7 0.895571
Target:  5'- -----uCUUcGAGCGcCGCUCGCGGCa -3'
miRNA:   3'- gcucauGAAuCUCGCuGCGAGCGCUG- -5'
24751 3' -52.9 NC_005264.1 + 59745 0.7 0.895571
Target:  5'- aGAGU-CaUGGGGCGGCGgCU-GCGACg -3'
miRNA:   3'- gCUCAuGaAUCUCGCUGC-GAgCGCUG- -5'
24751 3' -52.9 NC_005264.1 + 123188 0.69 0.902101
Target:  5'- aGAGUuguACUUGGA-CGAgGCcgCGCGGCa -3'
miRNA:   3'- gCUCA---UGAAUCUcGCUgCGa-GCGCUG- -5'
24751 3' -52.9 NC_005264.1 + 35986 0.69 0.908392
Target:  5'- gGGGcGCggAGAGCGAaaCGCgcaGCGACg -3'
miRNA:   3'- gCUCaUGaaUCUCGCU--GCGag-CGCUG- -5'
24751 3' -52.9 NC_005264.1 + 124714 0.69 0.914441
Target:  5'- aCGAGUAC--AGAGCGcgcgggcaACGCcUgGCGGCg -3'
miRNA:   3'- -GCUCAUGaaUCUCGC--------UGCG-AgCGCUG- -5'
24751 3' -52.9 NC_005264.1 + 5687 0.69 0.914441
Target:  5'- aCGAGUAC--AGAGCGcgcgggcaACGCcUgGCGGCg -3'
miRNA:   3'- -GCUCAUGaaUCUCGC--------UGCG-AgCGCUG- -5'
24751 3' -52.9 NC_005264.1 + 132582 0.69 0.920247
Target:  5'- aGAGg----AGAGCGGCGCgggCGgGACc -3'
miRNA:   3'- gCUCaugaaUCUCGCUGCGa--GCgCUG- -5'
24751 3' -52.9 NC_005264.1 + 13555 0.69 0.920247
Target:  5'- aGAGg----AGAGCGGCGCgggCGgGACc -3'
miRNA:   3'- gCUCaugaaUCUCGCUGCGa--GCgCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.