Results 21 - 40 of 60 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24751 | 3' | -52.9 | NC_005264.1 | + | 77491 | 0.69 | 0.925807 |
Target: 5'- uCGcAGUcGCUgcGAGCGAUcaugggGUUCGCGACg -3' miRNA: 3'- -GC-UCA-UGAauCUCGCUG------CGAGCGCUG- -5' |
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24751 | 3' | -52.9 | NC_005264.1 | + | 121854 | 0.68 | 0.931123 |
Target: 5'- aCGGGUugGCggAGGGCcggucGCGCUCGCGcCg -3' miRNA: 3'- -GCUCA--UGaaUCUCGc----UGCGAGCGCuG- -5' |
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24751 | 3' | -52.9 | NC_005264.1 | + | 37060 | 0.68 | 0.931123 |
Target: 5'- uGGGUACUacgGGcaggcuguuucuAGCGACGCg-GCGGCa -3' miRNA: 3'- gCUCAUGAa--UC------------UCGCUGCGagCGCUG- -5' |
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24751 | 3' | -52.9 | NC_005264.1 | + | 2828 | 0.68 | 0.931123 |
Target: 5'- aCGGGUugGCggAGGGCcggucGCGCUCGCGcCg -3' miRNA: 3'- -GCUCA--UGaaUCUCGc----UGCGAGCGCuG- -5' |
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24751 | 3' | -52.9 | NC_005264.1 | + | 156014 | 0.68 | 0.931123 |
Target: 5'- -aGGUACgcccGGCGACGCUUGCG-Cg -3' miRNA: 3'- gcUCAUGaaucUCGCUGCGAGCGCuG- -5' |
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24751 | 3' | -52.9 | NC_005264.1 | + | 103013 | 0.68 | 0.936194 |
Target: 5'- uGAGcucGCUUGGuGCGGCGCUaC-CGGCa -3' miRNA: 3'- gCUCa--UGAAUCuCGCUGCGA-GcGCUG- -5' |
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24751 | 3' | -52.9 | NC_005264.1 | + | 154521 | 0.68 | 0.945604 |
Target: 5'- aGGGgACgac-GGCGACGC-CGCGGCg -3' miRNA: 3'- gCUCaUGaaucUCGCUGCGaGCGCUG- -5' |
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24751 | 3' | -52.9 | NC_005264.1 | + | 35494 | 0.68 | 0.945604 |
Target: 5'- aGGGgACgac-GGCGACGC-CGCGGCg -3' miRNA: 3'- gCUCaUGaaucUCGCUGCGaGCGCUG- -5' |
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24751 | 3' | -52.9 | NC_005264.1 | + | 101876 | 0.68 | 0.949947 |
Target: 5'- cCGAG-ACaaUGGAGUGGCugaaGUUCGCGGCg -3' miRNA: 3'- -GCUCaUGa-AUCUCGCUG----CGAGCGCUG- -5' |
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24751 | 3' | -52.9 | NC_005264.1 | + | 137431 | 0.68 | 0.954053 |
Target: 5'- cCGAGUACUUcGGccuGGCGGUGCUCcUGACg -3' miRNA: 3'- -GCUCAUGAA-UC---UCGCUGCGAGcGCUG- -5' |
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24751 | 3' | -52.9 | NC_005264.1 | + | 124353 | 0.68 | 0.954053 |
Target: 5'- gGAGUACggGGAGaCGAagcgguCGCUCGUcccgGGCg -3' miRNA: 3'- gCUCAUGaaUCUC-GCU------GCGAGCG----CUG- -5' |
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24751 | 3' | -52.9 | NC_005264.1 | + | 5326 | 0.68 | 0.954053 |
Target: 5'- gGAGUACggGGAGaCGAagcgguCGCUCGUcccgGGCg -3' miRNA: 3'- gCUCAUGaaUCUC-GCU------GCGAGCG----CUG- -5' |
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24751 | 3' | -52.9 | NC_005264.1 | + | 125642 | 0.68 | 0.954053 |
Target: 5'- gGAGUcCaUGGAGCGGCGCcguaaaaugcgUCuGCGGCc -3' miRNA: 3'- gCUCAuGaAUCUCGCUGCG-----------AG-CGCUG- -5' |
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24751 | 3' | -52.9 | NC_005264.1 | + | 126941 | 0.67 | 0.957925 |
Target: 5'- gGAGUACUggGGGGaCGuaACGCUgcCGCGAg -3' miRNA: 3'- gCUCAUGAa-UCUC-GC--UGCGA--GCGCUg -5' |
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24751 | 3' | -52.9 | NC_005264.1 | + | 7915 | 0.67 | 0.957925 |
Target: 5'- gGAGUACUggGGGGaCGuaACGCUgcCGCGAg -3' miRNA: 3'- gCUCAUGAa-UCUC-GC--UGCGA--GCGCUg -5' |
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24751 | 3' | -52.9 | NC_005264.1 | + | 15759 | 0.67 | 0.961567 |
Target: 5'- uGuGUGCgcgcGAGCGugGCUCcggGCGAg -3' miRNA: 3'- gCuCAUGaau-CUCGCugCGAG---CGCUg -5' |
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24751 | 3' | -52.9 | NC_005264.1 | + | 55746 | 0.67 | 0.964985 |
Target: 5'- aGAG-GCUUccugAGAGCGAacacaaCGCUCGCG-Cu -3' miRNA: 3'- gCUCaUGAA----UCUCGCU------GCGAGCGCuG- -5' |
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24751 | 3' | -52.9 | NC_005264.1 | + | 56909 | 0.67 | 0.964985 |
Target: 5'- gCGAGcAUUaUGGGGCGGCGUacgugCGUGGCg -3' miRNA: 3'- -GCUCaUGA-AUCUCGCUGCGa----GCGCUG- -5' |
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24751 | 3' | -52.9 | NC_005264.1 | + | 52775 | 0.67 | 0.968184 |
Target: 5'- aGGcUGCcUGGAGCGAUGCuuUCGCGcCg -3' miRNA: 3'- gCUcAUGaAUCUCGCUGCG--AGCGCuG- -5' |
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24751 | 3' | -52.9 | NC_005264.1 | + | 48691 | 0.67 | 0.968184 |
Target: 5'- gCGAGUcuGCUcGucGCGGuCGCUCGCGGg -3' miRNA: 3'- -GCUCA--UGAaUcuCGCU-GCGAGCGCUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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