miRNA display CGI


Results 21 - 40 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24751 3' -52.9 NC_005264.1 + 48691 0.67 0.968184
Target:  5'- gCGAGUcuGCUcGucGCGGuCGCUCGCGGg -3'
miRNA:   3'- -GCUCA--UGAaUcuCGCU-GCGAGCGCUg -5'
24751 3' -52.9 NC_005264.1 + 52775 0.67 0.968184
Target:  5'- aGGcUGCcUGGAGCGAUGCuuUCGCGcCg -3'
miRNA:   3'- gCUcAUGaAUCUCGCUGCG--AGCGCuG- -5'
24751 3' -52.9 NC_005264.1 + 56909 0.67 0.964985
Target:  5'- gCGAGcAUUaUGGGGCGGCGUacgugCGUGGCg -3'
miRNA:   3'- -GCUCaUGA-AUCUCGCUGCGa----GCGCUG- -5'
24751 3' -52.9 NC_005264.1 + 55746 0.67 0.964985
Target:  5'- aGAG-GCUUccugAGAGCGAacacaaCGCUCGCG-Cu -3'
miRNA:   3'- gCUCaUGAA----UCUCGCU------GCGAGCGCuG- -5'
24751 3' -52.9 NC_005264.1 + 15759 0.67 0.961567
Target:  5'- uGuGUGCgcgcGAGCGugGCUCcggGCGAg -3'
miRNA:   3'- gCuCAUGaau-CUCGCugCGAG---CGCUg -5'
24751 3' -52.9 NC_005264.1 + 126941 0.67 0.957925
Target:  5'- gGAGUACUggGGGGaCGuaACGCUgcCGCGAg -3'
miRNA:   3'- gCUCAUGAa-UCUC-GC--UGCGA--GCGCUg -5'
24751 3' -52.9 NC_005264.1 + 7915 0.67 0.957925
Target:  5'- gGAGUACUggGGGGaCGuaACGCUgcCGCGAg -3'
miRNA:   3'- gCUCAUGAa-UCUC-GC--UGCGA--GCGCUg -5'
24751 3' -52.9 NC_005264.1 + 124353 0.68 0.954053
Target:  5'- gGAGUACggGGAGaCGAagcgguCGCUCGUcccgGGCg -3'
miRNA:   3'- gCUCAUGaaUCUC-GCU------GCGAGCG----CUG- -5'
24751 3' -52.9 NC_005264.1 + 125642 0.68 0.954053
Target:  5'- gGAGUcCaUGGAGCGGCGCcguaaaaugcgUCuGCGGCc -3'
miRNA:   3'- gCUCAuGaAUCUCGCUGCG-----------AG-CGCUG- -5'
24751 3' -52.9 NC_005264.1 + 5326 0.68 0.954053
Target:  5'- gGAGUACggGGAGaCGAagcgguCGCUCGUcccgGGCg -3'
miRNA:   3'- gCUCAUGaaUCUC-GCU------GCGAGCG----CUG- -5'
24751 3' -52.9 NC_005264.1 + 137431 0.68 0.954053
Target:  5'- cCGAGUACUUcGGccuGGCGGUGCUCcUGACg -3'
miRNA:   3'- -GCUCAUGAA-UC---UCGCUGCGAGcGCUG- -5'
24751 3' -52.9 NC_005264.1 + 101876 0.68 0.949947
Target:  5'- cCGAG-ACaaUGGAGUGGCugaaGUUCGCGGCg -3'
miRNA:   3'- -GCUCaUGa-AUCUCGCUG----CGAGCGCUG- -5'
24751 3' -52.9 NC_005264.1 + 154521 0.68 0.945604
Target:  5'- aGGGgACgac-GGCGACGC-CGCGGCg -3'
miRNA:   3'- gCUCaUGaaucUCGCUGCGaGCGCUG- -5'
24751 3' -52.9 NC_005264.1 + 35494 0.68 0.945604
Target:  5'- aGGGgACgac-GGCGACGC-CGCGGCg -3'
miRNA:   3'- gCUCaUGaaucUCGCUGCGaGCGCUG- -5'
24751 3' -52.9 NC_005264.1 + 103013 0.68 0.936194
Target:  5'- uGAGcucGCUUGGuGCGGCGCUaC-CGGCa -3'
miRNA:   3'- gCUCa--UGAAUCuCGCUGCGA-GcGCUG- -5'
24751 3' -52.9 NC_005264.1 + 156014 0.68 0.931123
Target:  5'- -aGGUACgcccGGCGACGCUUGCG-Cg -3'
miRNA:   3'- gcUCAUGaaucUCGCUGCGAGCGCuG- -5'
24751 3' -52.9 NC_005264.1 + 37060 0.68 0.931123
Target:  5'- uGGGUACUacgGGcaggcuguuucuAGCGACGCg-GCGGCa -3'
miRNA:   3'- gCUCAUGAa--UC------------UCGCUGCGagCGCUG- -5'
24751 3' -52.9 NC_005264.1 + 121854 0.68 0.931123
Target:  5'- aCGGGUugGCggAGGGCcggucGCGCUCGCGcCg -3'
miRNA:   3'- -GCUCA--UGaaUCUCGc----UGCGAGCGCuG- -5'
24751 3' -52.9 NC_005264.1 + 2828 0.68 0.931123
Target:  5'- aCGGGUugGCggAGGGCcggucGCGCUCGCGcCg -3'
miRNA:   3'- -GCUCA--UGaaUCUCGc----UGCGAGCGCuG- -5'
24751 3' -52.9 NC_005264.1 + 77491 0.69 0.925807
Target:  5'- uCGcAGUcGCUgcGAGCGAUcaugggGUUCGCGACg -3'
miRNA:   3'- -GC-UCA-UGAauCUCGCUG------CGAGCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.