Results 21 - 40 of 60 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24751 | 3' | -52.9 | NC_005264.1 | + | 124272 | 0.71 | 0.850794 |
Target: 5'- uCGGGUACguuUAGAGCGccgggagGCGagUCGCGGCc -3' miRNA: 3'- -GCUCAUGa--AUCUCGC-------UGCg-AGCGCUG- -5' |
|||||||
24751 | 3' | -52.9 | NC_005264.1 | + | 127840 | 0.7 | 0.895571 |
Target: 5'- -----uCUUcGAGCGcCGCUCGCGGCa -3' miRNA: 3'- gcucauGAAuCUCGCuGCGAGCGCUG- -5' |
|||||||
24751 | 3' | -52.9 | NC_005264.1 | + | 35986 | 0.69 | 0.908392 |
Target: 5'- gGGGcGCggAGAGCGAaaCGCgcaGCGACg -3' miRNA: 3'- gCUCaUGaaUCUCGCU--GCGag-CGCUG- -5' |
|||||||
24751 | 3' | -52.9 | NC_005264.1 | + | 124714 | 0.69 | 0.914441 |
Target: 5'- aCGAGUAC--AGAGCGcgcgggcaACGCcUgGCGGCg -3' miRNA: 3'- -GCUCAUGaaUCUCGC--------UGCG-AgCGCUG- -5' |
|||||||
24751 | 3' | -52.9 | NC_005264.1 | + | 132582 | 0.69 | 0.920247 |
Target: 5'- aGAGg----AGAGCGGCGCgggCGgGACc -3' miRNA: 3'- gCUCaugaaUCUCGCUGCGa--GCgCUG- -5' |
|||||||
24751 | 3' | -52.9 | NC_005264.1 | + | 37060 | 0.68 | 0.931123 |
Target: 5'- uGGGUACUacgGGcaggcuguuucuAGCGACGCg-GCGGCa -3' miRNA: 3'- gCUCAUGAa--UC------------UCGCUGCGagCGCUG- -5' |
|||||||
24751 | 3' | -52.9 | NC_005264.1 | + | 121854 | 0.68 | 0.931123 |
Target: 5'- aCGGGUugGCggAGGGCcggucGCGCUCGCGcCg -3' miRNA: 3'- -GCUCA--UGaaUCUCGc----UGCGAGCGCuG- -5' |
|||||||
24751 | 3' | -52.9 | NC_005264.1 | + | 39269 | 0.67 | 0.97117 |
Target: 5'- cCGAG-ACUUGGcGCGACGC-CGaaGACc -3' miRNA: 3'- -GCUCaUGAAUCuCGCUGCGaGCg-CUG- -5' |
|||||||
24751 | 3' | -52.9 | NC_005264.1 | + | 17933 | 0.67 | 0.97117 |
Target: 5'- ----cGCUUAGAaaGACcagGCUCGCGACa -3' miRNA: 3'- gcucaUGAAUCUcgCUG---CGAGCGCUG- -5' |
|||||||
24751 | 3' | -52.9 | NC_005264.1 | + | 31782 | 0.67 | 0.97117 |
Target: 5'- gCGGGcGCUUcgccuaAGGGCGGCGgUCGCcGCc -3' miRNA: 3'- -GCUCaUGAA------UCUCGCUGCgAGCGcUG- -5' |
|||||||
24751 | 3' | -52.9 | NC_005264.1 | + | 77423 | 0.67 | 0.97117 |
Target: 5'- gCGAcgACgu-GAGgGugGUUCGCGACc -3' miRNA: 3'- -GCUcaUGaauCUCgCugCGAGCGCUG- -5' |
|||||||
24751 | 3' | -52.9 | NC_005264.1 | + | 52775 | 0.67 | 0.968184 |
Target: 5'- aGGcUGCcUGGAGCGAUGCuuUCGCGcCg -3' miRNA: 3'- gCUcAUGaAUCUCGCUGCG--AGCGCuG- -5' |
|||||||
24751 | 3' | -52.9 | NC_005264.1 | + | 75925 | 0.67 | 0.97117 |
Target: 5'- uGGGUAgUUAGgaucggacAGCGugGUcucuaUCGCGGCc -3' miRNA: 3'- gCUCAUgAAUC--------UCGCugCG-----AGCGCUG- -5' |
|||||||
24751 | 3' | -52.9 | NC_005264.1 | + | 4077 | 0.67 | 0.97117 |
Target: 5'- gCGGG-GCUguugcacGGGCGGCG-UCGCGGCa -3' miRNA: 3'- -GCUCaUGAau-----CUCGCUGCgAGCGCUG- -5' |
|||||||
24751 | 3' | -52.9 | NC_005264.1 | + | 100536 | 0.66 | 0.973949 |
Target: 5'- gCGGGU-CUaguccGGA-CGACGCUCGCGGg -3' miRNA: 3'- -GCUCAuGAa----UCUcGCUGCGAGCGCUg -5' |
|||||||
24751 | 3' | -52.9 | NC_005264.1 | + | 106295 | 0.66 | 0.973949 |
Target: 5'- gGAGaaguCggAGAGCGACaGCU-GCGGCg -3' miRNA: 3'- gCUCau--GaaUCUCGCUG-CGAgCGCUG- -5' |
|||||||
24751 | 3' | -52.9 | NC_005264.1 | + | 9672 | 0.66 | 0.978915 |
Target: 5'- gCGAGgcCUUGGgggaGGCGG-GCUCGCGcCu -3' miRNA: 3'- -GCUCauGAAUC----UCGCUgCGAGCGCuG- -5' |
|||||||
24751 | 3' | -52.9 | NC_005264.1 | + | 98673 | 0.66 | 0.978915 |
Target: 5'- -cAGUGCU---GGCGGCGCUUGC-ACa -3' miRNA: 3'- gcUCAUGAaucUCGCUGCGAGCGcUG- -5' |
|||||||
24751 | 3' | -52.9 | NC_005264.1 | + | 79382 | 0.66 | 0.980691 |
Target: 5'- cCGAGuUACUUcagaaccgccgcGGGCGugGCgaggcCGCGGCg -3' miRNA: 3'- -GCUC-AUGAAu-----------CUCGCugCGa----GCGCUG- -5' |
|||||||
24751 | 3' | -52.9 | NC_005264.1 | + | 34960 | 1.11 | 0.004841 |
Target: 5'- gCGAGUACUUAGAGCGACGCUCGCGACg -3' miRNA: 3'- -GCUCAUGAAUCUCGCUGCGAGCGCUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home