miRNA display CGI


Results 21 - 40 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24751 3' -52.9 NC_005264.1 + 48691 0.67 0.968184
Target:  5'- gCGAGUcuGCUcGucGCGGuCGCUCGCGGg -3'
miRNA:   3'- -GCUCA--UGAaUcuCGCU-GCGAGCGCUg -5'
24751 3' -52.9 NC_005264.1 + 52775 0.67 0.968184
Target:  5'- aGGcUGCcUGGAGCGAUGCuuUCGCGcCg -3'
miRNA:   3'- gCUcAUGaAUCUCGCUGCG--AGCGCuG- -5'
24751 3' -52.9 NC_005264.1 + 55746 0.67 0.964985
Target:  5'- aGAG-GCUUccugAGAGCGAacacaaCGCUCGCG-Cu -3'
miRNA:   3'- gCUCaUGAA----UCUCGCU------GCGAGCGCuG- -5'
24751 3' -52.9 NC_005264.1 + 56909 0.67 0.964985
Target:  5'- gCGAGcAUUaUGGGGCGGCGUacgugCGUGGCg -3'
miRNA:   3'- -GCUCaUGA-AUCUCGCUGCGa----GCGCUG- -5'
24751 3' -52.9 NC_005264.1 + 59745 0.7 0.895571
Target:  5'- aGAGU-CaUGGGGCGGCGgCU-GCGACg -3'
miRNA:   3'- gCUCAuGaAUCUCGCUGC-GAgCGCUG- -5'
24751 3' -52.9 NC_005264.1 + 67005 0.71 0.82677
Target:  5'- gCGAGUGCUgccuggacGGAGCGGCGgcCUUGCG-Ca -3'
miRNA:   3'- -GCUCAUGAa-------UCUCGCUGC--GAGCGCuG- -5'
24751 3' -52.9 NC_005264.1 + 75925 0.67 0.97117
Target:  5'- uGGGUAgUUAGgaucggacAGCGugGUcucuaUCGCGGCc -3'
miRNA:   3'- gCUCAUgAAUC--------UCGCugCG-----AGCGCUG- -5'
24751 3' -52.9 NC_005264.1 + 77423 0.67 0.97117
Target:  5'- gCGAcgACgu-GAGgGugGUUCGCGACc -3'
miRNA:   3'- -GCUcaUGaauCUCgCugCGAGCGCUG- -5'
24751 3' -52.9 NC_005264.1 + 77491 0.69 0.925807
Target:  5'- uCGcAGUcGCUgcGAGCGAUcaugggGUUCGCGACg -3'
miRNA:   3'- -GC-UCA-UGAauCUCGCUG------CGAGCGCUG- -5'
24751 3' -52.9 NC_005264.1 + 79382 0.66 0.980691
Target:  5'- cCGAGuUACUUcagaaccgccgcGGGCGugGCgaggcCGCGGCg -3'
miRNA:   3'- -GCUC-AUGAAu-----------CUCGCugCGa----GCGCUG- -5'
24751 3' -52.9 NC_005264.1 + 82308 0.66 0.981117
Target:  5'- --cGUACUguuugGGGGCGACGaCguugcgcacCGCGGCg -3'
miRNA:   3'- gcuCAUGAa----UCUCGCUGC-Ga--------GCGCUG- -5'
24751 3' -52.9 NC_005264.1 + 86756 0.72 0.800316
Target:  5'- ----cGCgcccgUAGAGCcgucGACGCUCGCGGCg -3'
miRNA:   3'- gcucaUGa----AUCUCG----CUGCGAGCGCUG- -5'
24751 3' -52.9 NC_005264.1 + 96877 0.72 0.781884
Target:  5'- aCGAGUAUUgaagaUGGcauGGCGGCGCgcgagggCGCGGCa -3'
miRNA:   3'- -GCUCAUGA-----AUC---UCGCUGCGa------GCGCUG- -5'
24751 3' -52.9 NC_005264.1 + 98673 0.66 0.978915
Target:  5'- -cAGUGCU---GGCGGCGCUUGC-ACa -3'
miRNA:   3'- gcUCAUGAaucUCGCUGCGAGCGcUG- -5'
24751 3' -52.9 NC_005264.1 + 100536 0.66 0.973949
Target:  5'- gCGGGU-CUaguccGGA-CGACGCUCGCGGg -3'
miRNA:   3'- -GCUCAuGAa----UCUcGCUGCGAGCGCUg -5'
24751 3' -52.9 NC_005264.1 + 101876 0.68 0.949947
Target:  5'- cCGAG-ACaaUGGAGUGGCugaaGUUCGCGGCg -3'
miRNA:   3'- -GCUCaUGa-AUCUCGCUG----CGAGCGCUG- -5'
24751 3' -52.9 NC_005264.1 + 103013 0.68 0.936194
Target:  5'- uGAGcucGCUUGGuGCGGCGCUaC-CGGCa -3'
miRNA:   3'- gCUCa--UGAAUCuCGCUGCGA-GcGCUG- -5'
24751 3' -52.9 NC_005264.1 + 103706 0.72 0.772457
Target:  5'- uGAGgGCcagUGGAGCGGCGg-CGCGGCa -3'
miRNA:   3'- gCUCaUGa--AUCUCGCUGCgaGCGCUG- -5'
24751 3' -52.9 NC_005264.1 + 106295 0.66 0.973949
Target:  5'- gGAGaaguCggAGAGCGACaGCU-GCGGCg -3'
miRNA:   3'- gCUCau--GaaUCUCGCUG-CGAgCGCUG- -5'
24751 3' -52.9 NC_005264.1 + 116418 0.71 0.835236
Target:  5'- uCGAGcGC--AGGGCGGCGUgcagccUCGCGGCg -3'
miRNA:   3'- -GCUCaUGaaUCUCGCUGCG------AGCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.