miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24751 3' -52.9 NC_005264.1 + 2828 0.68 0.931123
Target:  5'- aCGGGUugGCggAGGGCcggucGCGCUCGCGcCg -3'
miRNA:   3'- -GCUCA--UGaaUCUCGc----UGCGAGCGCuG- -5'
24751 3' -52.9 NC_005264.1 + 4077 0.67 0.97117
Target:  5'- gCGGG-GCUguugcacGGGCGGCG-UCGCGGCa -3'
miRNA:   3'- -GCUCaUGAau-----CUCGCUGCgAGCGCUG- -5'
24751 3' -52.9 NC_005264.1 + 4860 0.67 0.97117
Target:  5'- aGAGUuaucCUUAGAGCuuGGCGgCaaGCGACa -3'
miRNA:   3'- gCUCAu---GAAUCUCG--CUGC-GagCGCUG- -5'
24751 3' -52.9 NC_005264.1 + 5245 0.71 0.850794
Target:  5'- uCGGGUACguuUAGAGCGccgggagGCGagUCGCGGCc -3'
miRNA:   3'- -GCUCAUGa--AUCUCGC-------UGCg-AGCGCUG- -5'
24751 3' -52.9 NC_005264.1 + 5326 0.68 0.954053
Target:  5'- gGAGUACggGGAGaCGAagcgguCGCUCGUcccgGGCg -3'
miRNA:   3'- gCUCAUGaaUCUC-GCU------GCGAGCG----CUG- -5'
24751 3' -52.9 NC_005264.1 + 5687 0.69 0.914441
Target:  5'- aCGAGUAC--AGAGCGcgcgggcaACGCcUgGCGGCg -3'
miRNA:   3'- -GCUCAUGaaUCUCGC--------UGCG-AgCGCUG- -5'
24751 3' -52.9 NC_005264.1 + 7915 0.67 0.957925
Target:  5'- gGAGUACUggGGGGaCGuaACGCUgcCGCGAg -3'
miRNA:   3'- gCUCAUGAa-UCUC-GC--UGCGA--GCGCUg -5'
24751 3' -52.9 NC_005264.1 + 8814 0.7 0.895571
Target:  5'- -----uCUUcGAGCGcCGCUCGCGGCa -3'
miRNA:   3'- gcucauGAAuCUCGCuGCGAGCGCUG- -5'
24751 3' -52.9 NC_005264.1 + 9672 0.66 0.978915
Target:  5'- gCGAGgcCUUGGgggaGGCGG-GCUCGCGcCu -3'
miRNA:   3'- -GCUCauGAAUC----UCGCUgCGAGCGCuG- -5'
24751 3' -52.9 NC_005264.1 + 13555 0.69 0.920247
Target:  5'- aGAGg----AGAGCGGCGCgggCGgGACc -3'
miRNA:   3'- gCUCaugaaUCUCGCUGCGa--GCgCUG- -5'
24751 3' -52.9 NC_005264.1 + 15759 0.67 0.961567
Target:  5'- uGuGUGCgcgcGAGCGugGCUCcggGCGAg -3'
miRNA:   3'- gCuCAUGaau-CUCGCugCGAG---CGCUg -5'
24751 3' -52.9 NC_005264.1 + 17933 0.67 0.97117
Target:  5'- ----cGCUUAGAaaGACcagGCUCGCGACa -3'
miRNA:   3'- gcucaUGAAUCUcgCUG---CGAGCGCUG- -5'
24751 3' -52.9 NC_005264.1 + 19905 0.66 0.976528
Target:  5'- uCGGGUGCUUuguGGUGGCGC-CGUGcCa -3'
miRNA:   3'- -GCUCAUGAAuc-UCGCUGCGaGCGCuG- -5'
24751 3' -52.9 NC_005264.1 + 22843 0.71 0.82677
Target:  5'- aCGGGUACggacGGGCGAgGCcgCGCGAa -3'
miRNA:   3'- -GCUCAUGaau-CUCGCUgCGa-GCGCUg -5'
24751 3' -52.9 NC_005264.1 + 31782 0.67 0.97117
Target:  5'- gCGGGcGCUUcgccuaAGGGCGGCGgUCGCcGCc -3'
miRNA:   3'- -GCUCaUGAA------UCUCGCUGCgAGCGcUG- -5'
24751 3' -52.9 NC_005264.1 + 34960 1.11 0.004841
Target:  5'- gCGAGUACUUAGAGCGACGCUCGCGACg -3'
miRNA:   3'- -GCUCAUGAAUCUCGCUGCGAGCGCUG- -5'
24751 3' -52.9 NC_005264.1 + 35494 0.68 0.945604
Target:  5'- aGGGgACgac-GGCGACGC-CGCGGCg -3'
miRNA:   3'- gCUCaUGaaucUCGCUGCGaGCGCUG- -5'
24751 3' -52.9 NC_005264.1 + 35986 0.69 0.908392
Target:  5'- gGGGcGCggAGAGCGAaaCGCgcaGCGACg -3'
miRNA:   3'- gCUCaUGaaUCUCGCU--GCGag-CGCUG- -5'
24751 3' -52.9 NC_005264.1 + 37060 0.68 0.931123
Target:  5'- uGGGUACUacgGGcaggcuguuucuAGCGACGCg-GCGGCa -3'
miRNA:   3'- gCUCAUGAa--UC------------UCGCUGCGagCGCUG- -5'
24751 3' -52.9 NC_005264.1 + 39269 0.67 0.97117
Target:  5'- cCGAG-ACUUGGcGCGACGC-CGaaGACc -3'
miRNA:   3'- -GCUCaUGAAUCuCGCUGCGaGCg-CUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.