miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24751 3' -52.9 NC_005264.1 + 158296 0.67 0.97117
Target:  5'- cCGAG-ACUUGGcGCGACGC-CGaaGACc -3'
miRNA:   3'- -GCUCaUGAAUCuCGCUGCGaGCg-CUG- -5'
24751 3' -52.9 NC_005264.1 + 156014 0.68 0.931123
Target:  5'- -aGGUACgcccGGCGACGCUUGCG-Cg -3'
miRNA:   3'- gcUCAUGaaucUCGCUGCGAGCGCuG- -5'
24751 3' -52.9 NC_005264.1 + 154521 0.68 0.945604
Target:  5'- aGGGgACgac-GGCGACGC-CGCGGCg -3'
miRNA:   3'- gCUCaUGaaucUCGCUGCGaGCGCUG- -5'
24751 3' -52.9 NC_005264.1 + 153987 1.11 0.004841
Target:  5'- gCGAGUACUUAGAGCGACGCUCGCGACg -3'
miRNA:   3'- -GCUCAUGAAUCUCGCUGCGAGCGCUG- -5'
24751 3' -52.9 NC_005264.1 + 150808 0.67 0.97117
Target:  5'- gCGGGcGCUUcgccuaAGGGCGGCGgUCGCcGCc -3'
miRNA:   3'- -GCUCaUGAA------UCUCGCUGCgAGCGcUG- -5'
24751 3' -52.9 NC_005264.1 + 146419 0.71 0.835236
Target:  5'- gCGGGUGCUgaUGGcuCGAUGC-CGCGGCu -3'
miRNA:   3'- -GCUCAUGA--AUCucGCUGCGaGCGCUG- -5'
24751 3' -52.9 NC_005264.1 + 137431 0.68 0.954053
Target:  5'- cCGAGUACUUcGGccuGGCGGUGCUCcUGACg -3'
miRNA:   3'- -GCUCAUGAA-UC---UCGCUGCGAGcGCUG- -5'
24751 3' -52.9 NC_005264.1 + 135556 0.67 0.97117
Target:  5'- gCGAugACUUucgAGAagccgcGCGuCGCUCGCGACu -3'
miRNA:   3'- -GCUcaUGAA---UCU------CGCuGCGAGCGCUG- -5'
24751 3' -52.9 NC_005264.1 + 132582 0.69 0.920247
Target:  5'- aGAGg----AGAGCGGCGCgggCGgGACc -3'
miRNA:   3'- gCUCaugaaUCUCGCUGCGa--GCgCUG- -5'
24751 3' -52.9 NC_005264.1 + 130268 0.66 0.982751
Target:  5'- gCGGGUGCgcgacguuGCGGCGgCUacCGCGGCa -3'
miRNA:   3'- -GCUCAUGaaucu---CGCUGC-GA--GCGCUG- -5'
24751 3' -52.9 NC_005264.1 + 128699 0.66 0.978915
Target:  5'- gCGAGgcCUUGGgggaGGCGG-GCUCGCGcCu -3'
miRNA:   3'- -GCUCauGAAUC----UCGCUgCGAGCGCuG- -5'
24751 3' -52.9 NC_005264.1 + 127840 0.7 0.895571
Target:  5'- -----uCUUcGAGCGcCGCUCGCGGCa -3'
miRNA:   3'- gcucauGAAuCUCGCuGCGAGCGCUG- -5'
24751 3' -52.9 NC_005264.1 + 126941 0.67 0.957925
Target:  5'- gGAGUACUggGGGGaCGuaACGCUgcCGCGAg -3'
miRNA:   3'- gCUCAUGAa-UCUC-GC--UGCGA--GCGCUg -5'
24751 3' -52.9 NC_005264.1 + 125642 0.68 0.954053
Target:  5'- gGAGUcCaUGGAGCGGCGCcguaaaaugcgUCuGCGGCc -3'
miRNA:   3'- gCUCAuGaAUCUCGCUGCG-----------AG-CGCUG- -5'
24751 3' -52.9 NC_005264.1 + 124714 0.69 0.914441
Target:  5'- aCGAGUAC--AGAGCGcgcgggcaACGCcUgGCGGCg -3'
miRNA:   3'- -GCUCAUGaaUCUCGC--------UGCG-AgCGCUG- -5'
24751 3' -52.9 NC_005264.1 + 124353 0.68 0.954053
Target:  5'- gGAGUACggGGAGaCGAagcgguCGCUCGUcccgGGCg -3'
miRNA:   3'- gCUCAUGaaUCUC-GCU------GCGAGCG----CUG- -5'
24751 3' -52.9 NC_005264.1 + 124272 0.71 0.850794
Target:  5'- uCGGGUACguuUAGAGCGccgggagGCGagUCGCGGCc -3'
miRNA:   3'- -GCUCAUGa--AUCUCGC-------UGCg-AGCGCUG- -5'
24751 3' -52.9 NC_005264.1 + 123188 0.69 0.902101
Target:  5'- aGAGUuguACUUGGA-CGAgGCcgCGCGGCa -3'
miRNA:   3'- gCUCA---UGAAUCUcGCUgCGa-GCGCUG- -5'
24751 3' -52.9 NC_005264.1 + 123104 0.67 0.97117
Target:  5'- gCGGG-GCUguugcacGGGCGGCG-UCGCGGCa -3'
miRNA:   3'- -GCUCaUGAau-----CUCGCUGCgAGCGCUG- -5'
24751 3' -52.9 NC_005264.1 + 121854 0.68 0.931123
Target:  5'- aCGGGUugGCggAGGGCcggucGCGCUCGCGcCg -3'
miRNA:   3'- -GCUCA--UGaaUCUCGc----UGCGAGCGCuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.