miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24751 3' -52.9 NC_005264.1 + 135556 0.67 0.97117
Target:  5'- gCGAugACUUucgAGAagccgcGCGuCGCUCGCGACu -3'
miRNA:   3'- -GCUcaUGAA---UCU------CGCuGCGAGCGCUG- -5'
24751 3' -52.9 NC_005264.1 + 103013 0.68 0.936194
Target:  5'- uGAGcucGCUUGGuGCGGCGCUaC-CGGCa -3'
miRNA:   3'- gCUCa--UGAAUCuCGCUGCGA-GcGCUG- -5'
24751 3' -52.9 NC_005264.1 + 154521 0.68 0.945604
Target:  5'- aGGGgACgac-GGCGACGC-CGCGGCg -3'
miRNA:   3'- gCUCaUGaaucUCGCUGCGaGCGCUG- -5'
24751 3' -52.9 NC_005264.1 + 124353 0.68 0.954053
Target:  5'- gGAGUACggGGAGaCGAagcgguCGCUCGUcccgGGCg -3'
miRNA:   3'- gCUCAUGaaUCUC-GCU------GCGAGCG----CUG- -5'
24751 3' -52.9 NC_005264.1 + 137431 0.68 0.954053
Target:  5'- cCGAGUACUUcGGccuGGCGGUGCUCcUGACg -3'
miRNA:   3'- -GCUCAUGAA-UC---UCGCUGCGAGcGCUG- -5'
24751 3' -52.9 NC_005264.1 + 126941 0.67 0.957925
Target:  5'- gGAGUACUggGGGGaCGuaACGCUgcCGCGAg -3'
miRNA:   3'- gCUCAUGAa-UCUC-GC--UGCGA--GCGCUg -5'
24751 3' -52.9 NC_005264.1 + 15759 0.67 0.961567
Target:  5'- uGuGUGCgcgcGAGCGugGCUCcggGCGAg -3'
miRNA:   3'- gCuCAUGaau-CUCGCugCGAG---CGCUg -5'
24751 3' -52.9 NC_005264.1 + 55746 0.67 0.964985
Target:  5'- aGAG-GCUUccugAGAGCGAacacaaCGCUCGCG-Cu -3'
miRNA:   3'- gCUCaUGAA----UCUCGCU------GCGAGCGCuG- -5'
24751 3' -52.9 NC_005264.1 + 4860 0.67 0.97117
Target:  5'- aGAGUuaucCUUAGAGCuuGGCGgCaaGCGACa -3'
miRNA:   3'- gCUCAu---GAAUCUCG--CUGC-GagCGCUG- -5'
24751 3' -52.9 NC_005264.1 + 121854 0.68 0.931123
Target:  5'- aCGGGUugGCggAGGGCcggucGCGCUCGCGcCg -3'
miRNA:   3'- -GCUCA--UGaaUCUCGc----UGCGAGCGCuG- -5'
24751 3' -52.9 NC_005264.1 + 37060 0.68 0.931123
Target:  5'- uGGGUACUacgGGcaggcuguuucuAGCGACGCg-GCGGCa -3'
miRNA:   3'- gCUCAUGAa--UC------------UCGCUGCGagCGCUG- -5'
24751 3' -52.9 NC_005264.1 + 132582 0.69 0.920247
Target:  5'- aGAGg----AGAGCGGCGCgggCGgGACc -3'
miRNA:   3'- gCUCaugaaUCUCGCUGCGa--GCgCUG- -5'
24751 3' -52.9 NC_005264.1 + 86756 0.72 0.800316
Target:  5'- ----cGCgcccgUAGAGCcgucGACGCUCGCGGCg -3'
miRNA:   3'- gcucaUGa----AUCUCG----CUGCGAGCGCUG- -5'
24751 3' -52.9 NC_005264.1 + 22843 0.71 0.82677
Target:  5'- aCGGGUACggacGGGCGAgGCcgCGCGAa -3'
miRNA:   3'- -GCUCAUGaau-CUCGCUgCGa-GCGCUg -5'
24751 3' -52.9 NC_005264.1 + 67005 0.71 0.82677
Target:  5'- gCGAGUGCUgccuggacGGAGCGGCGgcCUUGCG-Ca -3'
miRNA:   3'- -GCUCAUGAa-------UCUCGCUGC--GAGCGCuG- -5'
24751 3' -52.9 NC_005264.1 + 146419 0.71 0.835236
Target:  5'- gCGGGUGCUgaUGGcuCGAUGC-CGCGGCu -3'
miRNA:   3'- -GCUCAUGA--AUCucGCUGCGaGCGCUG- -5'
24751 3' -52.9 NC_005264.1 + 124272 0.71 0.850794
Target:  5'- uCGGGUACguuUAGAGCGccgggagGCGagUCGCGGCc -3'
miRNA:   3'- -GCUCAUGa--AUCUCGC-------UGCg-AGCGCUG- -5'
24751 3' -52.9 NC_005264.1 + 127840 0.7 0.895571
Target:  5'- -----uCUUcGAGCGcCGCUCGCGGCa -3'
miRNA:   3'- gcucauGAAuCUCGCuGCGAGCGCUG- -5'
24751 3' -52.9 NC_005264.1 + 35986 0.69 0.908392
Target:  5'- gGGGcGCggAGAGCGAaaCGCgcaGCGACg -3'
miRNA:   3'- gCUCaUGaaUCUCGCU--GCGag-CGCUG- -5'
24751 3' -52.9 NC_005264.1 + 124714 0.69 0.914441
Target:  5'- aCGAGUAC--AGAGCGcgcgggcaACGCcUgGCGGCg -3'
miRNA:   3'- -GCUCAUGaaUCUCGC--------UGCG-AgCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.