Results 1 - 20 of 60 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24751 | 3' | -52.9 | NC_005264.1 | + | 130268 | 0.66 | 0.982751 |
Target: 5'- gCGGGUGCgcgacguuGCGGCGgCUacCGCGGCa -3' miRNA: 3'- -GCUCAUGaaucu---CGCUGC-GA--GCGCUG- -5' |
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24751 | 3' | -52.9 | NC_005264.1 | + | 5326 | 0.68 | 0.954053 |
Target: 5'- gGAGUACggGGAGaCGAagcgguCGCUCGUcccgGGCg -3' miRNA: 3'- gCUCAUGaaUCUC-GCU------GCGAGCG----CUG- -5' |
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24751 | 3' | -52.9 | NC_005264.1 | + | 35494 | 0.68 | 0.945604 |
Target: 5'- aGGGgACgac-GGCGACGC-CGCGGCg -3' miRNA: 3'- gCUCaUGaaucUCGCUGCGaGCGCUG- -5' |
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24751 | 3' | -52.9 | NC_005264.1 | + | 34960 | 1.11 | 0.004841 |
Target: 5'- gCGAGUACUUAGAGCGACGCUCGCGACg -3' miRNA: 3'- -GCUCAUGAAUCUCGCUGCGAGCGCUG- -5' |
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24751 | 3' | -52.9 | NC_005264.1 | + | 106295 | 0.66 | 0.973949 |
Target: 5'- gGAGaaguCggAGAGCGACaGCU-GCGGCg -3' miRNA: 3'- gCUCau--GaaUCUCGCUG-CGAgCGCUG- -5' |
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24751 | 3' | -52.9 | NC_005264.1 | + | 100536 | 0.66 | 0.973949 |
Target: 5'- gCGGGU-CUaguccGGA-CGACGCUCGCGGg -3' miRNA: 3'- -GCUCAuGAa----UCUcGCUGCGAGCGCUg -5' |
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24751 | 3' | -52.9 | NC_005264.1 | + | 75925 | 0.67 | 0.97117 |
Target: 5'- uGGGUAgUUAGgaucggacAGCGugGUcucuaUCGCGGCc -3' miRNA: 3'- gCUCAUgAAUC--------UCGCugCG-----AGCGCUG- -5' |
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24751 | 3' | -52.9 | NC_005264.1 | + | 39269 | 0.67 | 0.97117 |
Target: 5'- cCGAG-ACUUGGcGCGACGC-CGaaGACc -3' miRNA: 3'- -GCUCaUGAAUCuCGCUGCGaGCg-CUG- -5' |
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24751 | 3' | -52.9 | NC_005264.1 | + | 77423 | 0.67 | 0.97117 |
Target: 5'- gCGAcgACgu-GAGgGugGUUCGCGACc -3' miRNA: 3'- -GCUcaUGaauCUCgCugCGAGCGCUG- -5' |
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24751 | 3' | -52.9 | NC_005264.1 | + | 125642 | 0.68 | 0.954053 |
Target: 5'- gGAGUcCaUGGAGCGGCGCcguaaaaugcgUCuGCGGCc -3' miRNA: 3'- gCUCAuGaAUCUCGCUGCG-----------AG-CGCUG- -5' |
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24751 | 3' | -52.9 | NC_005264.1 | + | 48691 | 0.67 | 0.968184 |
Target: 5'- gCGAGUcuGCUcGucGCGGuCGCUCGCGGg -3' miRNA: 3'- -GCUCA--UGAaUcuCGCU-GCGAGCGCUg -5' |
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24751 | 3' | -52.9 | NC_005264.1 | + | 31782 | 0.67 | 0.97117 |
Target: 5'- gCGGGcGCUUcgccuaAGGGCGGCGgUCGCcGCc -3' miRNA: 3'- -GCUCaUGAA------UCUCGCUGCgAGCGcUG- -5' |
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24751 | 3' | -52.9 | NC_005264.1 | + | 79382 | 0.66 | 0.980691 |
Target: 5'- cCGAGuUACUUcagaaccgccgcGGGCGugGCgaggcCGCGGCg -3' miRNA: 3'- -GCUC-AUGAAu-----------CUCGCugCGa----GCGCUG- -5' |
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24751 | 3' | -52.9 | NC_005264.1 | + | 56909 | 0.67 | 0.964985 |
Target: 5'- gCGAGcAUUaUGGGGCGGCGUacgugCGUGGCg -3' miRNA: 3'- -GCUCaUGA-AUCUCGCUGCGa----GCGCUG- -5' |
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24751 | 3' | -52.9 | NC_005264.1 | + | 98673 | 0.66 | 0.978915 |
Target: 5'- -cAGUGCU---GGCGGCGCUUGC-ACa -3' miRNA: 3'- gcUCAUGAaucUCGCUGCGAGCGcUG- -5' |
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24751 | 3' | -52.9 | NC_005264.1 | + | 17933 | 0.67 | 0.97117 |
Target: 5'- ----cGCUUAGAaaGACcagGCUCGCGACa -3' miRNA: 3'- gcucaUGAAUCUcgCUG---CGAGCGCUG- -5' |
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24751 | 3' | -52.9 | NC_005264.1 | + | 7915 | 0.67 | 0.957925 |
Target: 5'- gGAGUACUggGGGGaCGuaACGCUgcCGCGAg -3' miRNA: 3'- gCUCAUGAa-UCUC-GC--UGCGA--GCGCUg -5' |
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24751 | 3' | -52.9 | NC_005264.1 | + | 101876 | 0.68 | 0.949947 |
Target: 5'- cCGAG-ACaaUGGAGUGGCugaaGUUCGCGGCg -3' miRNA: 3'- -GCUCaUGa-AUCUCGCUG----CGAGCGCUG- -5' |
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24751 | 3' | -52.9 | NC_005264.1 | + | 9672 | 0.66 | 0.978915 |
Target: 5'- gCGAGgcCUUGGgggaGGCGG-GCUCGCGcCu -3' miRNA: 3'- -GCUCauGAAUC----UCGCUgCGAGCGCuG- -5' |
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24751 | 3' | -52.9 | NC_005264.1 | + | 4077 | 0.67 | 0.97117 |
Target: 5'- gCGGG-GCUguugcacGGGCGGCG-UCGCGGCa -3' miRNA: 3'- -GCUCaUGAau-----CUCGCUGCgAGCGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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