miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24752 3' -57.6 NC_005264.1 + 121856 0.7 0.592137
Target:  5'- gGGUUGGcggagGGCCGGUcGCGCUcGCGCCGu -3'
miRNA:   3'- -UCGACU-----UUGGUCAaCGCGGcCGCGGU- -5'
24752 3' -57.6 NC_005264.1 + 121420 0.67 0.781107
Target:  5'- cGCaGGAGCCcg--GCGCCGGCcuGCCu -3'
miRNA:   3'- uCGaCUUUGGucaaCGCGGCCG--CGGu -5'
24752 3' -57.6 NC_005264.1 + 120039 0.66 0.816849
Target:  5'- cGGCgGGAACCGGUUuuaccuauucCGCCGGCcguaacugGCCAc -3'
miRNA:   3'- -UCGaCUUUGGUCAAc---------GCGGCCG--------CGGU- -5'
24752 3' -57.6 NC_005264.1 + 117673 0.7 0.612479
Target:  5'- cGCcaaGAGCCAGUggugGUGUCGGCGUCGa -3'
miRNA:   3'- uCGac-UUUGGUCAa---CGCGGCCGCGGU- -5'
24752 3' -57.6 NC_005264.1 + 108493 0.69 0.683728
Target:  5'- cGCUGAuccucuCUAGUgggguacgGCGUCGuGCGCCAc -3'
miRNA:   3'- uCGACUuu----GGUCAa-------CGCGGC-CGCGGU- -5'
24752 3' -57.6 NC_005264.1 + 104162 0.69 0.653278
Target:  5'- ---aGAGGCCGGgUGCGCCugcaGCGCCGg -3'
miRNA:   3'- ucgaCUUUGGUCaACGCGGc---CGCGGU- -5'
24752 3' -57.6 NC_005264.1 + 104045 0.66 0.847551
Target:  5'- cGCgGAAAUCGGUuugccgacauccucUGCGCCGaccaccgcgcguGCGCCu -3'
miRNA:   3'- uCGaCUUUGGUCA--------------ACGCGGC------------CGCGGu -5'
24752 3' -57.6 NC_005264.1 + 103702 0.72 0.502761
Target:  5'- aAGUUGAgGGCCAGUggaGCGgCGGCGCg- -3'
miRNA:   3'- -UCGACU-UUGGUCAa--CGCgGCCGCGgu -5'
24752 3' -57.6 NC_005264.1 + 101930 0.67 0.781107
Target:  5'- uGGCgcgcGAAACUGGcgGCGUCGGCcCCAc -3'
miRNA:   3'- -UCGa---CUUUGGUCaaCGCGGCCGcGGU- -5'
24752 3' -57.6 NC_005264.1 + 101349 0.71 0.541903
Target:  5'- uAGCcGAGACCgcgGGgcGCGUCGGCGCg- -3'
miRNA:   3'- -UCGaCUUUGG---UCaaCGCGGCCGCGgu -5'
24752 3' -57.6 NC_005264.1 + 99558 0.72 0.474231
Target:  5'- cGaCUGggGCCGGUUGUccucucucgaGCCGGUGCgGa -3'
miRNA:   3'- uC-GACuuUGGUCAACG----------CGGCCGCGgU- -5'
24752 3' -57.6 NC_005264.1 + 96101 0.69 0.683728
Target:  5'- -aCUGuuGCCgcGGUuuagGCGCCGGCGCUu -3'
miRNA:   3'- ucGACuuUGG--UCAa---CGCGGCCGCGGu -5'
24752 3' -57.6 NC_005264.1 + 93381 0.68 0.752876
Target:  5'- gGGC-GAGACaCAGaUUGCagagGCCGGCGCg- -3'
miRNA:   3'- -UCGaCUUUG-GUC-AACG----CGGCCGCGgu -5'
24752 3' -57.6 NC_005264.1 + 92514 0.66 0.849928
Target:  5'- gAGUUGAcgGACuCGGUcagcGCGCCGGCGg-- -3'
miRNA:   3'- -UCGACU--UUG-GUCAa---CGCGGCCGCggu -5'
24752 3' -57.6 NC_005264.1 + 91051 0.69 0.693805
Target:  5'- gAGCgaGAAGCCGag-GCGCuucugcaaCGGCGCCAg -3'
miRNA:   3'- -UCGa-CUUUGGUcaaCGCG--------GCCGCGGU- -5'
24752 3' -57.6 NC_005264.1 + 88135 0.68 0.752876
Target:  5'- gGGCUGAuGGCCGGUUacuucaagacGuCGCCgguGGCGCUAa -3'
miRNA:   3'- -UCGACU-UUGGUCAA----------C-GCGG---CCGCGGU- -5'
24752 3' -57.6 NC_005264.1 + 87735 0.7 0.602297
Target:  5'- uGCgcc--CCAGcucgGCGCCGGCGCCu -3'
miRNA:   3'- uCGacuuuGGUCaa--CGCGGCCGCGGu -5'
24752 3' -57.6 NC_005264.1 + 86131 0.75 0.36926
Target:  5'- uGUcGAAGCgAGUUGCGCCGcgcuccGCGCCAa -3'
miRNA:   3'- uCGaCUUUGgUCAACGCGGC------CGCGGU- -5'
24752 3' -57.6 NC_005264.1 + 82342 0.68 0.741303
Target:  5'- uGCUGAGuagacgcacguguGCCAGgcagGCGCgucgaucCGGUGCCGg -3'
miRNA:   3'- uCGACUU-------------UGGUCaa--CGCG-------GCCGCGGU- -5'
24752 3' -57.6 NC_005264.1 + 81771 0.66 0.849928
Target:  5'- cGGC--AGACCGGUUGcCGUCGauaaaccacGCGCCAg -3'
miRNA:   3'- -UCGacUUUGGUCAAC-GCGGC---------CGCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.