miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24752 3' -57.6 NC_005264.1 + 33931 0.68 0.743241
Target:  5'- aGGCUGGgaaGGCCGuGgcGCGCCGggaccGCGCCc -3'
miRNA:   3'- -UCGACU---UUGGU-CaaCGCGGC-----CGCGGu -5'
24752 3' -57.6 NC_005264.1 + 1012 0.66 0.816849
Target:  5'- cGGCgGGAACCGGUUuuaccuauucCGCCGGCcguaacugGCCAc -3'
miRNA:   3'- -UCGaCUUUGGUCAAc---------GCGGCCG--------CGGU- -5'
24752 3' -57.6 NC_005264.1 + 86131 0.75 0.36926
Target:  5'- uGUcGAAGCgAGUUGCGCCGcgcuccGCGCCAa -3'
miRNA:   3'- uCGaCUUUGgUCAACGCGGC------CGCGGU- -5'
24752 3' -57.6 NC_005264.1 + 87735 0.7 0.602297
Target:  5'- uGCgcc--CCAGcucgGCGCCGGCGCCu -3'
miRNA:   3'- uCGacuuuGGUCaa--CGCGGCCGCGGu -5'
24752 3' -57.6 NC_005264.1 + 19766 0.68 0.743241
Target:  5'- uGUUGAGccCCAGUaGCucuauGCCGGUGCCGc -3'
miRNA:   3'- uCGACUUu-GGUCAaCG-----CGGCCGCGGU- -5'
24752 3' -57.6 NC_005264.1 + 36962 0.66 0.825389
Target:  5'- cGCac-GACagaGGUUgcGCGCUGGCGCCAu -3'
miRNA:   3'- uCGacuUUGg--UCAA--CGCGGCCGCGGU- -5'
24752 3' -57.6 NC_005264.1 + 21311 0.7 0.60535
Target:  5'- uGGCggacuuaUGGGugCAGUuguggcgcccguagaUGCGCCGGgGCCGg -3'
miRNA:   3'- -UCG-------ACUUugGUCA---------------ACGCGGCCgCGGU- -5'
24752 3' -57.6 NC_005264.1 + 78511 0.66 0.833753
Target:  5'- cGgUGAGGCCAGUaaccaucGCGCCGuGC-CCGg -3'
miRNA:   3'- uCgACUUUGGUCAa------CGCGGC-CGcGGU- -5'
24752 3' -57.6 NC_005264.1 + 136182 0.66 0.841936
Target:  5'- -uUUGucguuCUAGcgcgGCGCCGGCGCCGc -3'
miRNA:   3'- ucGACuuu--GGUCaa--CGCGGCCGCGGU- -5'
24752 3' -57.6 NC_005264.1 + 125702 0.68 0.752876
Target:  5'- uGgaGAGACCGccgGCGCCuGGUGCCc -3'
miRNA:   3'- uCgaCUUUGGUcaaCGCGG-CCGCGGu -5'
24752 3' -57.6 NC_005264.1 + 82342 0.68 0.741303
Target:  5'- uGCUGAGuagacgcacguguGCCAGgcagGCGCgucgaucCGGUGCCGg -3'
miRNA:   3'- uCGACUU-------------UGGUCaa--CGCG-------GCCGCGGU- -5'
24752 3' -57.6 NC_005264.1 + 8005 0.68 0.703831
Target:  5'- uGC-GggGCCGGcagagGCGCCcgccacgacGGCGCCAc -3'
miRNA:   3'- uCGaCuuUGGUCaa---CGCGG---------CCGCGGU- -5'
24752 3' -57.6 NC_005264.1 + 2830 0.7 0.592137
Target:  5'- gGGUUGGcggagGGCCGGUcGCGCUcGCGCCGu -3'
miRNA:   3'- -UCGACU-----UUGGUCAaCGCGGcCGCGGU- -5'
24752 3' -57.6 NC_005264.1 + 103702 0.72 0.502761
Target:  5'- aAGUUGAgGGCCAGUggaGCGgCGGCGCg- -3'
miRNA:   3'- -UCGACU-UUGGUCAa--CGCgGCCGCGgu -5'
24752 3' -57.6 NC_005264.1 + 149243 0.76 0.308672
Target:  5'- cGCUG--GCCGGUgugGCGCUGGgGCCGa -3'
miRNA:   3'- uCGACuuUGGUCAa--CGCGGCCgCGGU- -5'
24752 3' -57.6 NC_005264.1 + 93381 0.68 0.752876
Target:  5'- gGGC-GAGACaCAGaUUGCagagGCCGGCGCg- -3'
miRNA:   3'- -UCGaCUUUG-GUC-AACG----CGGCCGCGgu -5'
24752 3' -57.6 NC_005264.1 + 128095 0.67 0.808143
Target:  5'- cAGCgGcGACCGGc-GCGCCGGgaagaaCGCCAa -3'
miRNA:   3'- -UCGaCuUUGGUCaaCGCGGCC------GCGGU- -5'
24752 3' -57.6 NC_005264.1 + 101930 0.67 0.781107
Target:  5'- uGGCgcgcGAAACUGGcgGCGUCGGCcCCAc -3'
miRNA:   3'- -UCGa---CUUUGGUCaaCGCGGCCGcGGU- -5'
24752 3' -57.6 NC_005264.1 + 154949 0.66 0.826233
Target:  5'- cGGCgagGAGACCuccgacgccgcaucuGggGCGCCGaCGCCGc -3'
miRNA:   3'- -UCGa--CUUUGGu--------------CaaCGCGGCcGCGGU- -5'
24752 3' -57.6 NC_005264.1 + 37959 0.68 0.723693
Target:  5'- gGGCgguuAGCCAGUUGCGCggcacgUGGCGUUg -3'
miRNA:   3'- -UCGacu-UUGGUCAACGCG------GCCGCGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.