Results 1 - 20 of 99 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24752 | 5' | -51.2 | NC_005264.1 | + | 25987 | 0.66 | 0.994523 |
Target: 5'- -aUAACCUCGGCAGaCGgguACAGUaUCGGc -3' miRNA: 3'- uaGUUGGAGCUGUU-GU---UGUCGaGGCC- -5' |
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24752 | 5' | -51.2 | NC_005264.1 | + | 112969 | 0.67 | 0.987532 |
Target: 5'- uUUAGCCaaUCGGu--CAGCAGCUCCGc -3' miRNA: 3'- uAGUUGG--AGCUguuGUUGUCGAGGCc -5' |
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24752 | 5' | -51.2 | NC_005264.1 | + | 95352 | 0.67 | 0.984083 |
Target: 5'- -aCGGaCUCGGCGggGCGGCGGC-CCGGc -3' miRNA: 3'- uaGUUgGAGCUGU--UGUUGUCGaGGCC- -5' |
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24752 | 5' | -51.2 | NC_005264.1 | + | 35405 | 1.08 | 0.00975 |
Target: 5'- cAUCAACCUCGACAACAACAGCUCCGGc -3' miRNA: 3'- -UAGUUGGAGCUGUUGUUGUCGAGGCC- -5' |
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24752 | 5' | -51.2 | NC_005264.1 | + | 106508 | 0.66 | 0.993468 |
Target: 5'- uAUCAACgaggcggugcgCGACGGCGGCAGCgcggCCGcGg -3' miRNA: 3'- -UAGUUGga---------GCUGUUGUUGUCGa---GGC-C- -5' |
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24752 | 5' | -51.2 | NC_005264.1 | + | 69041 | 0.66 | 0.992679 |
Target: 5'- aGUCGAUCUCuuUGGCcGCGGCcgCCGGg -3' miRNA: 3'- -UAGUUGGAGcuGUUGuUGUCGa-GGCC- -5' |
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24752 | 5' | -51.2 | NC_005264.1 | + | 138672 | 0.66 | 0.992679 |
Target: 5'- -cCGACCgCGGCcGCAGCAGCcUCGa -3' miRNA: 3'- uaGUUGGaGCUGuUGUUGUCGaGGCc -5' |
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24752 | 5' | -51.2 | NC_005264.1 | + | 71508 | 0.66 | 0.992679 |
Target: 5'- -cCAGCCUUcACAGCcaaccGCAGCgccUCCGGu -3' miRNA: 3'- uaGUUGGAGcUGUUGu----UGUCG---AGGCC- -5' |
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24752 | 5' | -51.2 | NC_005264.1 | + | 57698 | 0.66 | 0.991589 |
Target: 5'- cUCGACCgCGGCAuACAGC-GCUUCGu -3' miRNA: 3'- uAGUUGGaGCUGU-UGUUGuCGAGGCc -5' |
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24752 | 5' | -51.2 | NC_005264.1 | + | 151892 | 0.67 | 0.987532 |
Target: 5'- cAUCAGCUguaugUGGCGgaggggACGGCGGCUCCa- -3' miRNA: 3'- -UAGUUGGa----GCUGU------UGUUGUCGAGGcc -5' |
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24752 | 5' | -51.2 | NC_005264.1 | + | 8789 | 0.66 | 0.990373 |
Target: 5'- cGUCGGCCagGACGGcCAGC-GCUCCu- -3' miRNA: 3'- -UAGUUGGagCUGUU-GUUGuCGAGGcc -5' |
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24752 | 5' | -51.2 | NC_005264.1 | + | 65665 | 0.66 | 0.991589 |
Target: 5'- uGUCcGCCUCGGCGGCAAacguaucgaGGaaaCCGGa -3' miRNA: 3'- -UAGuUGGAGCUGUUGUUg--------UCga-GGCC- -5' |
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24752 | 5' | -51.2 | NC_005264.1 | + | 156890 | 0.66 | 0.994523 |
Target: 5'- cGUCAACa--GGCAACGccGCGGgUUCGGg -3' miRNA: 3'- -UAGUUGgagCUGUUGU--UGUCgAGGCC- -5' |
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24752 | 5' | -51.2 | NC_005264.1 | + | 39087 | 0.66 | 0.990373 |
Target: 5'- -cCGG-CUCGGCgGGCAGCGGCgUCUGGa -3' miRNA: 3'- uaGUUgGAGCUG-UUGUUGUCG-AGGCC- -5' |
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24752 | 5' | -51.2 | NC_005264.1 | + | 75717 | 0.66 | 0.99444 |
Target: 5'- -aCGAUCUCGGCGuACAgcgcgugGCAGUUgCGGu -3' miRNA: 3'- uaGUUGGAGCUGU-UGU-------UGUCGAgGCC- -5' |
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24752 | 5' | -51.2 | NC_005264.1 | + | 19174 | 0.66 | 0.991589 |
Target: 5'- -aCAACCagGAU---GAUGGCUCCGGg -3' miRNA: 3'- uaGUUGGagCUGuugUUGUCGAGGCC- -5' |
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24752 | 5' | -51.2 | NC_005264.1 | + | 137538 | 0.66 | 0.989024 |
Target: 5'- gGUCGGCCUCGGCGACGuggUAGgUCa-- -3' miRNA: 3'- -UAGUUGGAGCUGUUGUu--GUCgAGgcc -5' |
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24752 | 5' | -51.2 | NC_005264.1 | + | 35687 | 0.67 | 0.985888 |
Target: 5'- -cCGACCUCGGCGucuccuCAGCccGUUCCGa -3' miRNA: 3'- uaGUUGGAGCUGUu-----GUUGu-CGAGGCc -5' |
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24752 | 5' | -51.2 | NC_005264.1 | + | 151178 | 0.66 | 0.993655 |
Target: 5'- gGUCGaauugcGCgaCGACGACAGCAGCccugCCGc -3' miRNA: 3'- -UAGU------UGgaGCUGUUGUUGUCGa---GGCc -5' |
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24752 | 5' | -51.2 | NC_005264.1 | + | 2497 | 0.66 | 0.992679 |
Target: 5'- gGUCGgcggGCCUCGcGCGACuuCAGCg-CGGg -3' miRNA: 3'- -UAGU----UGGAGC-UGUUGuuGUCGagGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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