miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24753 5' -57.8 NC_005264.1 + 126625 0.66 0.859485
Target:  5'- cAGCCcagaaAACGCGUCgAGCaccucGGGGGGGGa -3'
miRNA:   3'- -UUGG-----UUGUGCGG-UCGcuu--CUCCCCCC- -5'
24753 5' -57.8 NC_005264.1 + 119834 0.66 0.851806
Target:  5'- -cCCGAgACcCCGGgGGggggguuaAGGGGGGGGg -3'
miRNA:   3'- uuGGUUgUGcGGUCgCU--------UCUCCCCCC- -5'
24753 5' -57.8 NC_005264.1 + 67341 0.66 0.851806
Target:  5'- cGAUC-GC-CGCC-GCGAAGAGGGcGGa -3'
miRNA:   3'- -UUGGuUGuGCGGuCGCUUCUCCC-CCc -5'
24753 5' -57.8 NC_005264.1 + 149570 0.66 0.851806
Target:  5'- cGCgGACA-GCCccgGGCGGAGGGGGGc- -3'
miRNA:   3'- uUGgUUGUgCGG---UCGCUUCUCCCCcc -5'
24753 5' -57.8 NC_005264.1 + 808 0.66 0.851806
Target:  5'- -cCCGAgACcCCGGgGGggggguuaAGGGGGGGGg -3'
miRNA:   3'- uuGGUUgUGcGGUCgCU--------UCUCCCCCC- -5'
24753 5' -57.8 NC_005264.1 + 131563 0.66 0.847105
Target:  5'- uAGCCggUAggagcggggggcguuCGCC-GCGAAgauaccgcuGAGGGGGGa -3'
miRNA:   3'- -UUGGuuGU---------------GCGGuCGCUU---------CUCCCCCC- -5'
24753 5' -57.8 NC_005264.1 + 12536 0.66 0.847105
Target:  5'- uAGCCggUAggagcggggggcguuCGCC-GCGAAgauaccgcuGAGGGGGGa -3'
miRNA:   3'- -UUGGuuGU---------------GCGGuCGCUU---------CUCCCCCC- -5'
24753 5' -57.8 NC_005264.1 + 8283 0.66 0.843933
Target:  5'- cGCCAACaagGCGCCcGUGGGcGAcGGGGGc -3'
miRNA:   3'- uUGGUUG---UGCGGuCGCUU-CUcCCCCC- -5'
24753 5' -57.8 NC_005264.1 + 153230 0.66 0.843933
Target:  5'- cAGCCAcguuACGgaGCCuucGGCGcauGGGGGGGGa -3'
miRNA:   3'- -UUGGU----UGUg-CGG---UCGCuu-CUCCCCCC- -5'
24753 5' -57.8 NC_005264.1 + 127310 0.66 0.843933
Target:  5'- cGCCAACaagGCGCCcGUGGGcGAcGGGGGc -3'
miRNA:   3'- uUGGUUG---UGCGGuCGCUU-CUcCCCCC- -5'
24753 5' -57.8 NC_005264.1 + 100867 0.66 0.827631
Target:  5'- gGACCAgGCGCGCgA-CGAGGGGGaaugcuacGGGGg -3'
miRNA:   3'- -UUGGU-UGUGCGgUcGCUUCUCC--------CCCC- -5'
24753 5' -57.8 NC_005264.1 + 13443 0.66 0.826797
Target:  5'- aGACgCGACGCGgCGGCGccgAAGGGGcuccugcGGGGa -3'
miRNA:   3'- -UUG-GUUGUGCgGUCGC---UUCUCC-------CCCC- -5'
24753 5' -57.8 NC_005264.1 + 132470 0.66 0.826797
Target:  5'- aGACgCGACGCGgCGGCGccgAAGGGGcuccugcGGGGa -3'
miRNA:   3'- -UUG-GUUGUGCgGUCGC---UUCUCC-------CCCC- -5'
24753 5' -57.8 NC_005264.1 + 36222 0.67 0.810634
Target:  5'- aGACCAGa--GCCcGCGAGGuuuAGGGGcGGa -3'
miRNA:   3'- -UUGGUUgugCGGuCGCUUC---UCCCC-CC- -5'
24753 5' -57.8 NC_005264.1 + 160523 0.67 0.810634
Target:  5'- -uCCuuACGCGCC-GCu--GGGGGGGGa -3'
miRNA:   3'- uuGGu-UGUGCGGuCGcuuCUCCCCCC- -5'
24753 5' -57.8 NC_005264.1 + 155249 0.67 0.810634
Target:  5'- aGACCAGa--GCCcGCGAGGuuuAGGGGcGGa -3'
miRNA:   3'- -UUGGUUgugCGGuCGCUUC---UCCCC-CC- -5'
24753 5' -57.8 NC_005264.1 + 144294 0.67 0.793006
Target:  5'- -uCCGACugACGCCGGCGcgcccucAGGGGGa -3'
miRNA:   3'- uuGGUUG--UGCGGUCGCuuc----UCCCCCc -5'
24753 5' -57.8 NC_005264.1 + 31178 0.67 0.783976
Target:  5'- gGGCCGGaGgGCgAGCGAgugGGAcGGGGGGc -3'
miRNA:   3'- -UUGGUUgUgCGgUCGCU---UCU-CCCCCC- -5'
24753 5' -57.8 NC_005264.1 + 150205 0.67 0.783976
Target:  5'- gGGCCGGaGgGCgAGCGAgugGGAcGGGGGGc -3'
miRNA:   3'- -UUGGUUgUgCGgUCGCU---UCU-CCCCCC- -5'
24753 5' -57.8 NC_005264.1 + 118610 0.67 0.774812
Target:  5'- cGACUucgcCGCGCuugaaggggaaCAGCucuGggGAGGGGGGg -3'
miRNA:   3'- -UUGGuu--GUGCG-----------GUCG---CuuCUCCCCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.