Results 1 - 20 of 87 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24754 | 3' | -61.8 | NC_005264.1 | + | 156292 | 1.1 | 0.000785 |
Target: 5'- gGACGAGGCGCUCCUGCCGAAGCCCCCu -3' miRNA: 3'- -CUGCUCCGCGAGGACGGCUUCGGGGG- -5' |
|||||||
24754 | 3' | -61.8 | NC_005264.1 | + | 37265 | 1.1 | 0.000785 |
Target: 5'- gGACGAGGCGCUCCUGCCGAAGCCCCCu -3' miRNA: 3'- -CUGCUCCGCGAGGACGGCUUCGGGGG- -5' |
|||||||
24754 | 3' | -61.8 | NC_005264.1 | + | 49138 | 0.74 | 0.259136 |
Target: 5'- uGCGAGGCGCcUCUGCCcAAGCcuugcaCCCCg -3' miRNA: 3'- cUGCUCCGCGaGGACGGcUUCG------GGGG- -5' |
|||||||
24754 | 3' | -61.8 | NC_005264.1 | + | 12039 | 0.74 | 0.271207 |
Target: 5'- -uCGcuGCGCUCCUGCCccacacGCCCCCa -3' miRNA: 3'- cuGCucCGCGAGGACGGcuu---CGGGGG- -5' |
|||||||
24754 | 3' | -61.8 | NC_005264.1 | + | 57257 | 0.73 | 0.290155 |
Target: 5'- -uUGAGGCGCUCgaGCCcuAGCCCgCg -3' miRNA: 3'- cuGCUCCGCGAGgaCGGcuUCGGGgG- -5' |
|||||||
24754 | 3' | -61.8 | NC_005264.1 | + | 156151 | 0.72 | 0.351652 |
Target: 5'- gGGCGAGGCggccgucucggccucGCUgcuggcgccaggaucUCUGCCGGAGCUUCCg -3' miRNA: 3'- -CUGCUCCG---------------CGA---------------GGACGGCUUCGGGGG- -5' |
|||||||
24754 | 3' | -61.8 | NC_005264.1 | + | 63159 | 0.72 | 0.345696 |
Target: 5'- cGGCGAGG-GCaugaacCCUGCCGcguGGGCCCCg -3' miRNA: 3'- -CUGCUCCgCGa-----GGACGGC---UUCGGGGg -5' |
|||||||
24754 | 3' | -61.8 | NC_005264.1 | + | 37124 | 0.72 | 0.351652 |
Target: 5'- gGGCGAGGCggccgucucggccucGCUgcuggcgccaggaucUCUGCCGGAGCUUCCg -3' miRNA: 3'- -CUGCUCCG---------------CGA---------------GGACGGCUUCGGGGG- -5' |
|||||||
24754 | 3' | -61.8 | NC_005264.1 | + | 3748 | 0.71 | 0.376197 |
Target: 5'- aGCGGGGC-CUCUUGCCGccggggcgcugcGGGCCCUUg -3' miRNA: 3'- cUGCUCCGcGAGGACGGC------------UUCGGGGG- -5' |
|||||||
24754 | 3' | -61.8 | NC_005264.1 | + | 39522 | 0.71 | 0.3841 |
Target: 5'- gGACGAuaaggacGUGCUCuCUGCCGccGCCCCg -3' miRNA: 3'- -CUGCUc------CGCGAG-GACGGCuuCGGGGg -5' |
|||||||
24754 | 3' | -61.8 | NC_005264.1 | + | 158549 | 0.71 | 0.3841 |
Target: 5'- gGACGAuaaggacGUGCUCuCUGCCGccGCCCCg -3' miRNA: 3'- -CUGCUc------CGCGAG-GACGGCuuCGGGGg -5' |
|||||||
24754 | 3' | -61.8 | NC_005264.1 | + | 122774 | 0.71 | 0.376197 |
Target: 5'- aGCGGGGC-CUCUUGCCGccggggcgcugcGGGCCCUUg -3' miRNA: 3'- cUGCUCCGcGAGGACGGC------------UUCGGGGG- -5' |
|||||||
24754 | 3' | -61.8 | NC_005264.1 | + | 154833 | 0.71 | 0.376197 |
Target: 5'- uGGCG-GGCGCcUCUGCCG--GCCCCg -3' miRNA: 3'- -CUGCuCCGCGaGGACGGCuuCGGGGg -5' |
|||||||
24754 | 3' | -61.8 | NC_005264.1 | + | 35807 | 0.71 | 0.376197 |
Target: 5'- uGGCG-GGCGCcUCUGCCG--GCCCCg -3' miRNA: 3'- -CUGCuCCGCGaGGACGGCuuCGGGGg -5' |
|||||||
24754 | 3' | -61.8 | NC_005264.1 | + | 20144 | 0.7 | 0.433765 |
Target: 5'- aGGCGAuGGCGCgCC-GCCGgcGCCCa- -3' miRNA: 3'- -CUGCU-CCGCGaGGaCGGCuuCGGGgg -5' |
|||||||
24754 | 3' | -61.8 | NC_005264.1 | + | 102203 | 0.7 | 0.4424 |
Target: 5'- aGGCGGGGaucaagcugcUGCUCCUGCgCGAgccGGCUgCCg -3' miRNA: 3'- -CUGCUCC----------GCGAGGACG-GCU---UCGGgGG- -5' |
|||||||
24754 | 3' | -61.8 | NC_005264.1 | + | 117512 | 0.7 | 0.459956 |
Target: 5'- gGGCGcGGCGCgUCUGCgGucGCUCCCc -3' miRNA: 3'- -CUGCuCCGCGaGGACGgCuuCGGGGG- -5' |
|||||||
24754 | 3' | -61.8 | NC_005264.1 | + | 78026 | 0.69 | 0.505377 |
Target: 5'- cGGCGAGGCuucGCUCCgugcGCCau-GCCCUg -3' miRNA: 3'- -CUGCUCCG---CGAGGa---CGGcuuCGGGGg -5' |
|||||||
24754 | 3' | -61.8 | NC_005264.1 | + | 161391 | 0.69 | 0.468871 |
Target: 5'- cGGCGAuGGCcggugcugGCUCCcGCgGAGGCCCUUu -3' miRNA: 3'- -CUGCU-CCG--------CGAGGaCGgCUUCGGGGG- -5' |
|||||||
24754 | 3' | -61.8 | NC_005264.1 | + | 42364 | 0.69 | 0.468871 |
Target: 5'- cGGCGAuGGCcggugcugGCUCCcGCgGAGGCCCUUu -3' miRNA: 3'- -CUGCU-CCG--------CGAGGaCGgCUUCGGGGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home