Results 1 - 20 of 79 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24756 | 3' | -56.7 | NC_005264.1 | + | 159497 | 1.08 | 0.002952 |
Target: 5'- gGAGCGAAAGACCCUCGCCAAGGCCAGu -3' miRNA: 3'- -CUCGCUUUCUGGGAGCGGUUCCGGUC- -5' |
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24756 | 3' | -56.7 | NC_005264.1 | + | 40470 | 1.08 | 0.002952 |
Target: 5'- gGAGCGAAAGACCCUCGCCAAGGCCAGu -3' miRNA: 3'- -CUCGCUUUCUGGGAGCGGUUCCGGUC- -5' |
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24756 | 3' | -56.7 | NC_005264.1 | + | 136686 | 0.75 | 0.414404 |
Target: 5'- -cGCGAAAG-UCCUCGCCGcGGCCuGg -3' miRNA: 3'- cuCGCUUUCuGGGAGCGGUuCCGGuC- -5' |
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24756 | 3' | -56.7 | NC_005264.1 | + | 66236 | 0.74 | 0.423171 |
Target: 5'- uGGCGAGcugcGGGCCuagcauCUCuGCCAGGGCCAGa -3' miRNA: 3'- cUCGCUU----UCUGG------GAG-CGGUUCCGGUC- -5' |
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24756 | 3' | -56.7 | NC_005264.1 | + | 64937 | 0.73 | 0.51642 |
Target: 5'- aAGCGAGAG-CCUUCG-CGAGGCCGc -3' miRNA: 3'- cUCGCUUUCuGGGAGCgGUUCCGGUc -5' |
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24756 | 3' | -56.7 | NC_005264.1 | + | 91400 | 0.73 | 0.51642 |
Target: 5'- aGAGUGGuuGGCCCUagCGCCGGGGCa-- -3' miRNA: 3'- -CUCGCUuuCUGGGA--GCGGUUCCGguc -5' |
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24756 | 3' | -56.7 | NC_005264.1 | + | 72322 | 0.71 | 0.627091 |
Target: 5'- uGGCGGuuuGGCCUUCGUCGAuGGCCGa -3' miRNA: 3'- cUCGCUuu-CUGGGAGCGGUU-CCGGUc -5' |
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24756 | 3' | -56.7 | NC_005264.1 | + | 99765 | 0.71 | 0.637318 |
Target: 5'- -cGCGAc-GGCCCUCGCCGAG-CUGGa -3' miRNA: 3'- cuCGCUuuCUGGGAGCGGUUCcGGUC- -5' |
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24756 | 3' | -56.7 | NC_005264.1 | + | 144422 | 0.71 | 0.596465 |
Target: 5'- cGAGCGAGAGggcGCgCCUgCGCC--GGCCGGa -3' miRNA: 3'- -CUCGCUUUC---UG-GGA-GCGGuuCCGGUC- -5' |
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24756 | 3' | -56.7 | NC_005264.1 | + | 46376 | 0.71 | 0.616868 |
Target: 5'- -cGCGcAGGACaCCgauacgcgggUCGUCAGGGCCAGg -3' miRNA: 3'- cuCGCuUUCUG-GG----------AGCGGUUCCGGUC- -5' |
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24756 | 3' | -56.7 | NC_005264.1 | + | 87697 | 0.71 | 0.596465 |
Target: 5'- uGGCGu--GGCCCUCguggauGCCGAGGCCu- -3' miRNA: 3'- cUCGCuuuCUGGGAG------CGGUUCCGGuc -5' |
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24756 | 3' | -56.7 | NC_005264.1 | + | 101174 | 0.71 | 0.627091 |
Target: 5'- cGAcCGAAcGGCCCUgagaacUGCCAGGGCCAa -3' miRNA: 3'- -CUcGCUUuCUGGGA------GCGGUUCCGGUc -5' |
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24756 | 3' | -56.7 | NC_005264.1 | + | 155564 | 0.7 | 0.66794 |
Target: 5'- uGGCGggGcucuCCgUCGCCAAGGCUAc -3' miRNA: 3'- cUCGCuuUcu--GGgAGCGGUUCCGGUc -5' |
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24756 | 3' | -56.7 | NC_005264.1 | + | 158795 | 0.7 | 0.6983 |
Target: 5'- aAGaGGAGGACCaauuauUCGCCGAGGCCu- -3' miRNA: 3'- cUCgCUUUCUGGg-----AGCGGUUCCGGuc -5' |
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24756 | 3' | -56.7 | NC_005264.1 | + | 97658 | 0.7 | 0.6781 |
Target: 5'- cGGCGaAAAGGCCgCg-GCCAuGGCCAGa -3' miRNA: 3'- cUCGC-UUUCUGG-GagCGGUuCCGGUC- -5' |
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24756 | 3' | -56.7 | NC_005264.1 | + | 17810 | 0.7 | 0.66794 |
Target: 5'- uGGCGguAGGCCCUgGCCAcGGCa-- -3' miRNA: 3'- cUCGCuuUCUGGGAgCGGUuCCGguc -5' |
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24756 | 3' | -56.7 | NC_005264.1 | + | 29468 | 0.7 | 0.6781 |
Target: 5'- -cGCGAu-GACUCUCGCCGagucgucgaggaGGGCCGc -3' miRNA: 3'- cuCGCUuuCUGGGAGCGGU------------UCCGGUc -5' |
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24756 | 3' | -56.7 | NC_005264.1 | + | 25289 | 0.7 | 0.688223 |
Target: 5'- uGGGUGugguguGACCUaccacgUCGCCGAGGCCGa -3' miRNA: 3'- -CUCGCuuu---CUGGG------AGCGGUUCCGGUc -5' |
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24756 | 3' | -56.7 | NC_005264.1 | + | 134930 | 0.7 | 0.64754 |
Target: 5'- -cGCGGucGucgucgcucACCCUCGCCGAgacgcuGGCCAGa -3' miRNA: 3'- cuCGCUuuC---------UGGGAGCGGUU------CCGGUC- -5' |
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24756 | 3' | -56.7 | NC_005264.1 | + | 136438 | 0.69 | 0.708321 |
Target: 5'- aGGCGGAAGAgCaugggCGCUGAGGCCGc -3' miRNA: 3'- cUCGCUUUCUgGga---GCGGUUCCGGUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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