miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24756 5' -60.4 NC_005264.1 + 120543 0.66 0.772868
Target:  5'- uGGCUgCGCCGUUUuuuGggGCCCCgcgGCg -3'
miRNA:   3'- -CCGG-GCGGCAAGc--CuuCGGGGag-UGa -5'
24756 5' -60.4 NC_005264.1 + 29409 0.66 0.772868
Target:  5'- cGGCaCCGCCGcaUCGGAggaGGUCaUgUCACUg -3'
miRNA:   3'- -CCG-GGCGGCa-AGCCU---UCGG-GgAGUGA- -5'
24756 5' -60.4 NC_005264.1 + 1516 0.66 0.772868
Target:  5'- uGGCUgCGCCGUUUuuuGggGCCCCgcgGCg -3'
miRNA:   3'- -CCGG-GCGGCAAGc--CuuCGGGGag-UGa -5'
24756 5' -60.4 NC_005264.1 + 43330 0.66 0.763798
Target:  5'- aGGgCUGCCGccUCGGAGcacGCCCUgCGCa -3'
miRNA:   3'- -CCgGGCGGCa-AGCCUU---CGGGGaGUGa -5'
24756 5' -60.4 NC_005264.1 + 154822 0.66 0.763798
Target:  5'- uGGCgCCGUCGUggCGGgcGCCUCUgccggcccCGCa -3'
miRNA:   3'- -CCG-GGCGGCAa-GCCuuCGGGGA--------GUGa -5'
24756 5' -60.4 NC_005264.1 + 35796 0.66 0.763798
Target:  5'- uGGCgCCGUCGUggCGGgcGCCUCUgccggcccCGCa -3'
miRNA:   3'- -CCG-GGCGGCAa-GCCuuCGGGGA--------GUGa -5'
24756 5' -60.4 NC_005264.1 + 154074 0.66 0.754621
Target:  5'- cGCCCGCCGUUC----GCCUCUCc-- -3'
miRNA:   3'- cCGGGCGGCAAGccuuCGGGGAGuga -5'
24756 5' -60.4 NC_005264.1 + 40959 0.66 0.754621
Target:  5'- cGGCuuGCuCGUaacagUCuGGAAGCuugcgccgaCCCUCGCUu -3'
miRNA:   3'- -CCGggCG-GCA-----AG-CCUUCG---------GGGAGUGA- -5'
24756 5' -60.4 NC_005264.1 + 49679 0.66 0.754621
Target:  5'- --gCCGCCaUUUGG-AGCUCCUCGCc -3'
miRNA:   3'- ccgGGCGGcAAGCCuUCGGGGAGUGa -5'
24756 5' -60.4 NC_005264.1 + 35047 0.66 0.754621
Target:  5'- cGCCCGCCGUUC----GCCUCUCc-- -3'
miRNA:   3'- cCGGGCGGCAAGccuuCGGGGAGuga -5'
24756 5' -60.4 NC_005264.1 + 7882 0.66 0.745343
Target:  5'- cGCCCcagauGCgGcgUCGGAGGUCuCCUCGCc -3'
miRNA:   3'- cCGGG-----CGgCa-AGCCUUCGG-GGAGUGa -5'
24756 5' -60.4 NC_005264.1 + 134680 0.66 0.745343
Target:  5'- uGUCUGCCGUUCaaGAGCCgCCcgCACUg -3'
miRNA:   3'- cCGGGCGGCAAGccUUCGG-GGa-GUGA- -5'
24756 5' -60.4 NC_005264.1 + 126908 0.66 0.745343
Target:  5'- cGCCCcagauGCgGcgUCGGAGGUCuCCUCGCc -3'
miRNA:   3'- cCGGG-----CGgCa-AGCCUUCGG-GGAGUGa -5'
24756 5' -60.4 NC_005264.1 + 52464 0.66 0.745343
Target:  5'- cGCCCGCCGUcggCGGuauuAGCauacuCCUCGa- -3'
miRNA:   3'- cCGGGCGGCAa--GCCu---UCGg----GGAGUga -5'
24756 5' -60.4 NC_005264.1 + 2409 0.66 0.741606
Target:  5'- cGGCCUGCCuaggaagaaagCGGAGGCCgCggaCACg -3'
miRNA:   3'- -CCGGGCGGcaa--------GCCUUCGGgGa--GUGa -5'
24756 5' -60.4 NC_005264.1 + 121436 0.66 0.741606
Target:  5'- cGGCCUGCCuaggaagaaagCGGAGGCCgCggaCACg -3'
miRNA:   3'- -CCGGGCGGcaa--------GCCUUCGGgGa--GUGa -5'
24756 5' -60.4 NC_005264.1 + 5495 0.66 0.735974
Target:  5'- gGGCCCGCCaacccUCGucGGCCUC-CGCg -3'
miRNA:   3'- -CCGGGCGGca---AGCcuUCGGGGaGUGa -5'
24756 5' -60.4 NC_005264.1 + 124522 0.66 0.735974
Target:  5'- gGGCCCGCCaacccUCGucGGCCUC-CGCg -3'
miRNA:   3'- -CCGGGCGGca---AGCcuUCGGGGaGUGa -5'
24756 5' -60.4 NC_005264.1 + 39755 0.66 0.726521
Target:  5'- -cCCCGCUG-UCGGGAGaUCCCgUCGCc -3'
miRNA:   3'- ccGGGCGGCaAGCCUUC-GGGG-AGUGa -5'
24756 5' -60.4 NC_005264.1 + 158781 0.66 0.726521
Target:  5'- -cCCCGCUG-UCGGGAGaUCCCgUCGCc -3'
miRNA:   3'- ccGGGCGGCaAGCCUUC-GGGG-AGUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.