miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24758 3' -58.9 NC_005264.1 + 25894 0.66 0.864703
Target:  5'- -aGAUUGCgaugCCCCAGGCGaacagAUGGCGg -3'
miRNA:   3'- ggCUGGUGa---GGGGUCUGCca---UGCCGC- -5'
24758 3' -58.9 NC_005264.1 + 78180 0.66 0.864703
Target:  5'- uCCG-CCugUgCCCGGaaagccggaugcGCGGaGCGGCa -3'
miRNA:   3'- -GGCuGGugAgGGGUC------------UGCCaUGCCGc -5'
24758 3' -58.9 NC_005264.1 + 50984 0.66 0.864703
Target:  5'- aCGcuCCGCUaCCCGGcaGCGGUGCGGa- -3'
miRNA:   3'- gGCu-GGUGAgGGGUC--UGCCAUGCCgc -5'
24758 3' -58.9 NC_005264.1 + 122197 0.66 0.864703
Target:  5'- gCGACC-CUCCgCGucgcGACGGcGCGGgGa -3'
miRNA:   3'- gGCUGGuGAGGgGU----CUGCCaUGCCgC- -5'
24758 3' -58.9 NC_005264.1 + 3170 0.66 0.864703
Target:  5'- gCGACC-CUCCgCGucgcGACGGcGCGGgGa -3'
miRNA:   3'- gGCUGGuGAGGgGU----CUGCCaUGCCgC- -5'
24758 3' -58.9 NC_005264.1 + 138581 0.66 0.863981
Target:  5'- aCCGACUaagguugACUUCCgCGGcaGCGGUGgGGUGc -3'
miRNA:   3'- -GGCUGG-------UGAGGG-GUC--UGCCAUgCCGC- -5'
24758 3' -58.9 NC_005264.1 + 133361 0.66 0.857398
Target:  5'- gCGGCC-CUCCUC-GACGacuCGGCGa -3'
miRNA:   3'- gGCUGGuGAGGGGuCUGCcauGCCGC- -5'
24758 3' -58.9 NC_005264.1 + 109916 0.66 0.857398
Target:  5'- gCGGCCAUgcaaugCCCCucgaaguGGCGGUucgccgaccuuACGGCc -3'
miRNA:   3'- gGCUGGUGa-----GGGGu------CUGCCA-----------UGCCGc -5'
24758 3' -58.9 NC_005264.1 + 146390 0.66 0.857398
Target:  5'- uUCGACCACguucacaCCCgCGGGCaGGccccGCGGCa -3'
miRNA:   3'- -GGCUGGUGa------GGG-GUCUG-CCa---UGCCGc -5'
24758 3' -58.9 NC_005264.1 + 18401 0.66 0.857398
Target:  5'- aCGACCACcgUUCCGGcCGGcGCaGGCGc -3'
miRNA:   3'- gGCUGGUGa-GGGGUCuGCCaUG-CCGC- -5'
24758 3' -58.9 NC_005264.1 + 26141 0.66 0.857398
Target:  5'- -gGGCCAUgaugUCCCAGGCc--GCGGCGa -3'
miRNA:   3'- ggCUGGUGa---GGGGUCUGccaUGCCGC- -5'
24758 3' -58.9 NC_005264.1 + 16021 0.66 0.852924
Target:  5'- aCGACCGCcgcgCCUCcgugcagucgagggaAGACGGgaGCGGCu -3'
miRNA:   3'- gGCUGGUGa---GGGG---------------UCUGCCa-UGCCGc -5'
24758 3' -58.9 NC_005264.1 + 75404 0.66 0.849905
Target:  5'- aCCGuCUGCgcggCCgCGGGCaGuGUACGGCGg -3'
miRNA:   3'- -GGCuGGUGa---GGgGUCUG-C-CAUGCCGC- -5'
24758 3' -58.9 NC_005264.1 + 109485 0.66 0.849905
Target:  5'- aCGcuuGCCACgccgUCCUUAGGCuGGUugGGCu -3'
miRNA:   3'- gGC---UGGUG----AGGGGUCUG-CCAugCCGc -5'
24758 3' -58.9 NC_005264.1 + 14193 0.66 0.849905
Target:  5'- gCGAUCGCcgucgCCCCAu-CGGccACGGCGg -3'
miRNA:   3'- gGCUGGUGa----GGGGUcuGCCa-UGCCGC- -5'
24758 3' -58.9 NC_005264.1 + 112977 0.66 0.849905
Target:  5'- aUCGGuCagcaGCUCCgCCAGAaGGcUGCGGCGu -3'
miRNA:   3'- -GGCU-Gg---UGAGG-GGUCUgCC-AUGCCGC- -5'
24758 3' -58.9 NC_005264.1 + 80660 0.66 0.842232
Target:  5'- aCGGCCGCUCUUCaAGAgGGccAUGGCc -3'
miRNA:   3'- gGCUGGUGAGGGG-UCUgCCa-UGCCGc -5'
24758 3' -58.9 NC_005264.1 + 83849 0.66 0.834383
Target:  5'- cUCGGCagguaACUCCUUAGuuuCGGcGCGGCa -3'
miRNA:   3'- -GGCUGg----UGAGGGGUCu--GCCaUGCCGc -5'
24758 3' -58.9 NC_005264.1 + 19994 0.66 0.834383
Target:  5'- aCCGACCGCgcucgCUCgCAucCGGUugGcGCGa -3'
miRNA:   3'- -GGCUGGUGa----GGG-GUcuGCCAugC-CGC- -5'
24758 3' -58.9 NC_005264.1 + 123620 0.66 0.826366
Target:  5'- -aGGCC-CUCCCCGccaGCGccGCGGCGg -3'
miRNA:   3'- ggCUGGuGAGGGGUc--UGCcaUGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.