Results 21 - 40 of 140 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24758 | 5' | -52.2 | NC_005264.1 | + | 74794 | 0.67 | 0.975378 |
Target: 5'- gGCGcCCGUAuugACCUGuacgcuucggccccGAGGAacgUGGGCa -3' miRNA: 3'- gCGC-GGCAUua-UGGAU--------------CUUCU---GCCCG- -5' |
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24758 | 5' | -52.2 | NC_005264.1 | + | 229 | 0.67 | 0.98079 |
Target: 5'- uCGCuuuCCGU---GCCUGGcgccacagcGAGGCGGGCc -3' miRNA: 3'- -GCGc--GGCAuuaUGGAUC---------UUCUGCCCG- -5' |
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24758 | 5' | -52.2 | NC_005264.1 | + | 45743 | 0.66 | 0.987408 |
Target: 5'- gCGCGCgGUcGUGCCguaucuagcacacAGAcagcGAUGGGCg -3' miRNA: 3'- -GCGCGgCAuUAUGGa------------UCUu---CUGCCCG- -5' |
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24758 | 5' | -52.2 | NC_005264.1 | + | 31102 | 0.66 | 0.989442 |
Target: 5'- cCGgGCCGcGGU-CCUAGGauccGGuccCGGGCg -3' miRNA: 3'- -GCgCGGCaUUAuGGAUCU----UCu--GCCCG- -5' |
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24758 | 5' | -52.2 | NC_005264.1 | + | 120704 | 0.68 | 0.964461 |
Target: 5'- uCGCGCCGacaaaGCCggcggucgggcGGAGGACGGuGCc -3' miRNA: 3'- -GCGCGGCauua-UGGa----------UCUUCUGCC-CG- -5' |
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24758 | 5' | -52.2 | NC_005264.1 | + | 156677 | 0.68 | 0.970717 |
Target: 5'- aCGCGUCGcuuuGUACagcccgcgcgAGAcccaGGACGGGCg -3' miRNA: 3'- -GCGCGGCau--UAUGga--------UCU----UCUGCCCG- -5' |
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24758 | 5' | -52.2 | NC_005264.1 | + | 111072 | 0.67 | 0.98079 |
Target: 5'- uCGCGCCGggcGAUugcaucucGCuCUcaGAGAUGGGCu -3' miRNA: 3'- -GCGCGGCa--UUA--------UG-GAucUUCUGCCCG- -5' |
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24758 | 5' | -52.2 | NC_005264.1 | + | 104481 | 0.66 | 0.989442 |
Target: 5'- uCGCGCCGgccccGCC-AGAGuacGACagGGGCg -3' miRNA: 3'- -GCGCGGCauua-UGGaUCUU---CUG--CCCG- -5' |
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24758 | 5' | -52.2 | NC_005264.1 | + | 85037 | 0.68 | 0.971866 |
Target: 5'- cCGCGCCGUcAAUGCCgucugcgccGCGGuGCg -3' miRNA: 3'- -GCGCGGCA-UUAUGGaucuuc---UGCC-CG- -5' |
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24758 | 5' | -52.2 | NC_005264.1 | + | 1539 | 0.66 | 0.99073 |
Target: 5'- cCGCGgCGUug-ACCgcgccGGcaauAGGCGGGCc -3' miRNA: 3'- -GCGCgGCAuuaUGGa----UCu---UCUGCCCG- -5' |
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24758 | 5' | -52.2 | NC_005264.1 | + | 9657 | 0.67 | 0.98079 |
Target: 5'- aGUGCagauCGUcuagcgagGCCUuggGGGAGGCGGGCu -3' miRNA: 3'- gCGCG----GCAuua-----UGGA---UCUUCUGCCCG- -5' |
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24758 | 5' | -52.2 | NC_005264.1 | + | 54135 | 0.67 | 0.97512 |
Target: 5'- gCGCGCCGgggucGGUGCCgacuacaucGACGGuGCg -3' miRNA: 3'- -GCGCGGCa----UUAUGGaucuu----CUGCC-CG- -5' |
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24758 | 5' | -52.2 | NC_005264.1 | + | 41349 | 0.66 | 0.984727 |
Target: 5'- aGCaGCCGcgAAgGCCcagcuccgGGAAGAaCGGGCa -3' miRNA: 3'- gCG-CGGCa-UUaUGGa-------UCUUCU-GCCCG- -5' |
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24758 | 5' | -52.2 | NC_005264.1 | + | 125715 | 0.66 | 0.986449 |
Target: 5'- gGCGCC-UGGUGCCccugUGGAAcGAguaguUGGGCg -3' miRNA: 3'- gCGCGGcAUUAUGG----AUCUU-CU-----GCCCG- -5' |
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24758 | 5' | -52.2 | NC_005264.1 | + | 25604 | 0.66 | 0.988017 |
Target: 5'- aGCGCCGg---GCCggcguugcGGAacacggcggcGGugGGGCc -3' miRNA: 3'- gCGCGGCauuaUGGa-------UCU----------UCugCCCG- -5' |
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24758 | 5' | -52.2 | NC_005264.1 | + | 119412 | 0.66 | 0.989442 |
Target: 5'- gGUGCUGUAcuUGCaCUcgcGGcuGGCGGGCg -3' miRNA: 3'- gCGCGGCAUu-AUG-GA---UCuuCUGCCCG- -5' |
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24758 | 5' | -52.2 | NC_005264.1 | + | 73050 | 0.69 | 0.949265 |
Target: 5'- aGCGCCGgcGguaugcgGCC-AGA-GACGuGGCg -3' miRNA: 3'- gCGCGGCauUa------UGGaUCUuCUGC-CCG- -5' |
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24758 | 5' | -52.2 | NC_005264.1 | + | 38178 | 0.68 | 0.961005 |
Target: 5'- cCGCGCUGUGGggacACCUAGcgucGCGcGGCc -3' miRNA: 3'- -GCGCGGCAUUa---UGGAUCuuc-UGC-CCG- -5' |
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24758 | 5' | -52.2 | NC_005264.1 | + | 39915 | 0.68 | 0.970717 |
Target: 5'- aGuCGCCGUGuaGCCagAGAacucgaccccgGGugGGGCc -3' miRNA: 3'- gC-GCGGCAUuaUGGa-UCU-----------UCugCCCG- -5' |
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24758 | 5' | -52.2 | NC_005264.1 | + | 45340 | 0.68 | 0.970717 |
Target: 5'- aCGCGCCGc---GCCc--GAGACGaGGCg -3' miRNA: 3'- -GCGCGGCauuaUGGaucUUCUGC-CCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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