miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24759 5' -59.4 NC_005264.1 + 16833 0.66 0.783578
Target:  5'- uGGuCAGAGGAUacuauacuUCCGCCagCCGCC-GCg -3'
miRNA:   3'- -UCuGUCUUCUG--------AGGCGG--GGCGGaCGa -5'
24759 5' -59.4 NC_005264.1 + 25689 0.66 0.783578
Target:  5'- gGGACGGGAcGCgcaUGCCCCGCCa--- -3'
miRNA:   3'- -UCUGUCUUcUGag-GCGGGGCGGacga -5'
24759 5' -59.4 NC_005264.1 + 120915 0.66 0.782674
Target:  5'- uGGCAGAaagcuacAGACcCCGCCgCGaCUGCg -3'
miRNA:   3'- uCUGUCU-------UCUGaGGCGGgGCgGACGa -5'
24759 5' -59.4 NC_005264.1 + 1889 0.66 0.782674
Target:  5'- uGGCAGAaagcuacAGACcCCGCCgCGaCUGCg -3'
miRNA:   3'- uCUGUCU-------UCUGaGGCGGgGCgGACGa -5'
24759 5' -59.4 NC_005264.1 + 71935 0.66 0.77448
Target:  5'- cAGGCAGGAGAUcgUGCCCCcaacGCCgguaaUGCUa -3'
miRNA:   3'- -UCUGUCUUCUGagGCGGGG----CGG-----ACGA- -5'
24759 5' -59.4 NC_005264.1 + 121860 0.66 0.77448
Target:  5'- uGGCGGAGGgccggucgcGCUCgCGCCgUCGCCcGCUg -3'
miRNA:   3'- uCUGUCUUC---------UGAG-GCGG-GGCGGaCGA- -5'
24759 5' -59.4 NC_005264.1 + 2834 0.66 0.77448
Target:  5'- uGGCGGAGGgccggucgcGCUCgCGCCgUCGCCcGCUg -3'
miRNA:   3'- uCUGUCUUC---------UGAG-GCGG-GGCGGaCGA- -5'
24759 5' -59.4 NC_005264.1 + 122375 0.66 0.773563
Target:  5'- uGGC-GAGGgucuuucGCUCCGCUCCGUCUGg- -3'
miRNA:   3'- uCUGuCUUC-------UGAGGCGGGGCGGACga -5'
24759 5' -59.4 NC_005264.1 + 151836 0.66 0.773563
Target:  5'- -aGCGGAAGACUggggccgCCGCUCCGgCgGCg -3'
miRNA:   3'- ucUGUCUUCUGA-------GGCGGGGCgGaCGa -5'
24759 5' -59.4 NC_005264.1 + 3348 0.66 0.773563
Target:  5'- uGGC-GAGGgucuuucGCUCCGCUCCGUCUGg- -3'
miRNA:   3'- uCUGuCUUC-------UGAGGCGGGGCGGACga -5'
24759 5' -59.4 NC_005264.1 + 5450 0.66 0.765259
Target:  5'- cGcCGGAGGAggucCUaaCCGCCCCGCCgcccaGCa -3'
miRNA:   3'- uCuGUCUUCU----GA--GGCGGGGCGGa----CGa -5'
24759 5' -59.4 NC_005264.1 + 124477 0.66 0.765259
Target:  5'- cGcCGGAGGAggucCUaaCCGCCCCGCCgcccaGCa -3'
miRNA:   3'- uCuGUCUUCU----GA--GGCGGGGCGGa----CGa -5'
24759 5' -59.4 NC_005264.1 + 125999 0.66 0.759672
Target:  5'- gGGGCAGAcAGuuGCUgucuacgaucuucgcCgCGCCUCGCCUGCg -3'
miRNA:   3'- -UCUGUCU-UC--UGA---------------G-GCGGGGCGGACGa -5'
24759 5' -59.4 NC_005264.1 + 106671 0.66 0.755925
Target:  5'- cGGCAGAGGaACUCCGCgCgGagUGCg -3'
miRNA:   3'- uCUGUCUUC-UGAGGCGgGgCggACGa -5'
24759 5' -59.4 NC_005264.1 + 136942 0.66 0.755925
Target:  5'- cGGACaAGAAGGCgcagCGCCCCacugugcggaGUCUGCa -3'
miRNA:   3'- -UCUG-UCUUCUGag--GCGGGG----------CGGACGa -5'
24759 5' -59.4 NC_005264.1 + 18298 0.66 0.745536
Target:  5'- cAGGgGGAaugccuaGGAC-CCGCCCUGCCaGUUg -3'
miRNA:   3'- -UCUgUCU-------UCUGaGGCGGGGCGGaCGA- -5'
24759 5' -59.4 NC_005264.1 + 63969 0.67 0.736949
Target:  5'- aAGACAGA--ACcCCGCUaCCGCUUGCc -3'
miRNA:   3'- -UCUGUCUucUGaGGCGG-GGCGGACGa -5'
24759 5' -59.4 NC_005264.1 + 75939 0.67 0.736949
Target:  5'- cGGACAGcguGGuCUCUaucgcgGCCgCCGCCUGUg -3'
miRNA:   3'- -UCUGUCu--UCuGAGG------CGG-GGCGGACGa -5'
24759 5' -59.4 NC_005264.1 + 60634 0.67 0.727325
Target:  5'- -cGCAGGAGcagcaGCUUgauCCCCGCCUGCUc -3'
miRNA:   3'- ucUGUCUUC-----UGAGgc-GGGGCGGACGA- -5'
24759 5' -59.4 NC_005264.1 + 131917 0.67 0.70785
Target:  5'- cGGACGGAccguCgagCCGCCCgGCCUcGCa -3'
miRNA:   3'- -UCUGUCUucu-Ga--GGCGGGgCGGA-CGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.