miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24760 5' -57.3 NC_005264.1 + 146079 0.66 0.894865
Target:  5'- aCAGCGcGCCCCCG-CgCGGGucuuGGUggacuaCGCa -3'
miRNA:   3'- -GUCGU-UGGGGGCaGaGCCCu---UCA------GCG- -5'
24760 5' -57.3 NC_005264.1 + 122194 0.66 0.894865
Target:  5'- aCGGCGACCCUccgCGUCgcgacggcgCGgGGAAGggcuuauuUCGCa -3'
miRNA:   3'- -GUCGUUGGGG---GCAGa--------GC-CCUUC--------AGCG- -5'
24760 5' -57.3 NC_005264.1 + 34051 0.66 0.894865
Target:  5'- aCGGCAGCguuaUCCCGUUgu-GGAAGcCGCg -3'
miRNA:   3'- -GUCGUUG----GGGGCAGagcCCUUCaGCG- -5'
24760 5' -57.3 NC_005264.1 + 51784 0.66 0.894865
Target:  5'- gCGGCGGCaCUUCGUC-CGGcGAGUcCGCg -3'
miRNA:   3'- -GUCGUUG-GGGGCAGaGCCcUUCA-GCG- -5'
24760 5' -57.3 NC_005264.1 + 3167 0.66 0.894865
Target:  5'- aCGGCGACCCUccgCGUCgcgacggcgCGgGGAAGggcuuauuUCGCa -3'
miRNA:   3'- -GUCGUUGGGG---GCAGa--------GC-CCUUC--------AGCG- -5'
24760 5' -57.3 NC_005264.1 + 24386 0.66 0.888301
Target:  5'- gCGGCu-CCCCCGg--CGGcGAGGuagaUCGCg -3'
miRNA:   3'- -GUCGuuGGGGGCagaGCC-CUUC----AGCG- -5'
24760 5' -57.3 NC_005264.1 + 149400 0.66 0.888301
Target:  5'- uCGGCGccGCCgCgucgCGUCUCGGcGGcggcGGUCGCg -3'
miRNA:   3'- -GUCGU--UGGgG----GCAGAGCC-CU----UCAGCG- -5'
24760 5' -57.3 NC_005264.1 + 30373 0.66 0.888301
Target:  5'- uCGGCGccGCCgCgucgCGUCUCGGcGGcggcGGUCGCg -3'
miRNA:   3'- -GUCGU--UGGgG----GCAGAGCC-CU----UCAGCG- -5'
24760 5' -57.3 NC_005264.1 + 6139 0.66 0.881519
Target:  5'- aAGC-ACCgCCCGUCcUGGGuc-UCGCg -3'
miRNA:   3'- gUCGuUGG-GGGCAGaGCCCuucAGCG- -5'
24760 5' -57.3 NC_005264.1 + 79888 0.66 0.881519
Target:  5'- gCGGCGGCgaCCGUCgcaGGcGAcGUCGCa -3'
miRNA:   3'- -GUCGUUGggGGCAGag-CC-CUuCAGCG- -5'
24760 5' -57.3 NC_005264.1 + 136929 0.66 0.88083
Target:  5'- aCAGCGcCCCCCGccaUCUguucgccUGGGGcaUCGCa -3'
miRNA:   3'- -GUCGUuGGGGGC---AGA-------GCCCUucAGCG- -5'
24760 5' -57.3 NC_005264.1 + 67739 0.66 0.874526
Target:  5'- uGGC-GCCUUCGcguaUCUCGGcGcAGGUCGCa -3'
miRNA:   3'- gUCGuUGGGGGC----AGAGCC-C-UUCAGCG- -5'
24760 5' -57.3 NC_005264.1 + 46146 0.66 0.874526
Target:  5'- gGGCAACCCUCGU---GGcGAAGUCa- -3'
miRNA:   3'- gUCGUUGGGGGCAgagCC-CUUCAGcg -5'
24760 5' -57.3 NC_005264.1 + 142539 0.66 0.867324
Target:  5'- aCAGCGACCUCagcccCUCGGGGccgcaAG-CGCg -3'
miRNA:   3'- -GUCGUUGGGGgca--GAGCCCU-----UCaGCG- -5'
24760 5' -57.3 NC_005264.1 + 6103 0.66 0.867324
Target:  5'- aCGGCGGCCauguCUGUUUUGuGGAAGguguUCGCg -3'
miRNA:   3'- -GUCGUUGGg---GGCAGAGC-CCUUC----AGCG- -5'
24760 5' -57.3 NC_005264.1 + 148753 0.67 0.859919
Target:  5'- cCAGCAGCCgUauacauggUUCGGGAAGUCugGCg -3'
miRNA:   3'- -GUCGUUGGgGgca-----GAGCCCUUCAG--CG- -5'
24760 5' -57.3 NC_005264.1 + 113239 0.67 0.844523
Target:  5'- gAGCGcCCCCCGUCguccu-GGUCGCc -3'
miRNA:   3'- gUCGUuGGGGGCAGagcccuUCAGCG- -5'
24760 5' -57.3 NC_005264.1 + 154897 0.67 0.835736
Target:  5'- cCAGUAGCCCCuccggcuCGUCUCGcGGcAG-CGUu -3'
miRNA:   3'- -GUCGUUGGGG-------GCAGAGC-CCuUCaGCG- -5'
24760 5' -57.3 NC_005264.1 + 35871 0.67 0.835736
Target:  5'- cCAGUAGCCCCuccggcuCGUCUCGcGGcAG-CGUu -3'
miRNA:   3'- -GUCGUUGGGG-------GCAGAGC-CCuUCaGCG- -5'
24760 5' -57.3 NC_005264.1 + 161939 0.68 0.802917
Target:  5'- cCAGCGGCCCgCGaCaCGGGGccguacacccAGUCGUa -3'
miRNA:   3'- -GUCGUUGGGgGCaGaGCCCU----------UCAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.