miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24761 3' -57.9 NC_005264.1 + 101401 0.66 0.867324
Target:  5'- aCUCGGCgCC--GAGGAGCGGGC-CGCc -3'
miRNA:   3'- -GGGUCGaGGccCUUCUUGCCCGuGUG- -5'
24761 3' -57.9 NC_005264.1 + 102481 0.66 0.859919
Target:  5'- aCCAGUUCUGGu-GGcuCGGGCGCc- -3'
miRNA:   3'- gGGUCGAGGCCcuUCuuGCCCGUGug -5'
24761 3' -57.9 NC_005264.1 + 125153 0.66 0.859919
Target:  5'- aUCAGgUgCGGGAGGGcgaGGGcCGCGCg -3'
miRNA:   3'- gGGUCgAgGCCCUUCUug-CCC-GUGUG- -5'
24761 3' -57.9 NC_005264.1 + 6126 0.66 0.859919
Target:  5'- aUCAGgUgCGGGAGGGcgaGGGcCGCGCg -3'
miRNA:   3'- gGGUCgAgGCCCUUCUug-CCC-GUGUG- -5'
24761 3' -57.9 NC_005264.1 + 79093 0.66 0.859919
Target:  5'- gUCAGCUuaCCGGGGAG-ACGcuuaagcucGGCACGg -3'
miRNA:   3'- gGGUCGA--GGCCCUUCuUGC---------CCGUGUg -5'
24761 3' -57.9 NC_005264.1 + 123772 0.66 0.852317
Target:  5'- gCCGGCgUCCGGGGGuGGACcGcCGCGCg -3'
miRNA:   3'- gGGUCG-AGGCCCUU-CUUGcCcGUGUG- -5'
24761 3' -57.9 NC_005264.1 + 4746 0.66 0.852317
Target:  5'- gCCGGCgUCCGGGGGuGGACcGcCGCGCg -3'
miRNA:   3'- gGGUCG-AGGCCCUU-CUUGcCcGUGUG- -5'
24761 3' -57.9 NC_005264.1 + 41650 0.66 0.844523
Target:  5'- -gCAGCgcggCCGGGucuAAGGACGuGCGCAUc -3'
miRNA:   3'- ggGUCGa---GGCCC---UUCUUGCcCGUGUG- -5'
24761 3' -57.9 NC_005264.1 + 6010 0.66 0.844523
Target:  5'- cCCCgacgggcggggaGGCUCCGGGGAaAACcaacGGCGCGa -3'
miRNA:   3'- -GGG------------UCGAGGCCCUUcUUGc---CCGUGUg -5'
24761 3' -57.9 NC_005264.1 + 125037 0.66 0.844523
Target:  5'- cCCCgacgggcggggaGGCUCCGGGGAaAACcaacGGCGCGa -3'
miRNA:   3'- -GGG------------UCGAGGCCCUUcUUGc---CCGUGUg -5'
24761 3' -57.9 NC_005264.1 + 41425 0.66 0.836544
Target:  5'- gCCGGCgCCGGGcuccuGCGGGCGacggcCACu -3'
miRNA:   3'- gGGUCGaGGCCCuucu-UGCCCGU-----GUG- -5'
24761 3' -57.9 NC_005264.1 + 105483 0.66 0.836544
Target:  5'- cUCCAGCgacgacggcgaUCCGGcGGAGGAagaGGauGCGCGCg -3'
miRNA:   3'- -GGGUCG-----------AGGCC-CUUCUUg--CC--CGUGUG- -5'
24761 3' -57.9 NC_005264.1 + 11342 0.66 0.836544
Target:  5'- aCC-GUUCUGGcGAGGAACugccaucugGGGCAUGCg -3'
miRNA:   3'- gGGuCGAGGCC-CUUCUUG---------CCCGUGUG- -5'
24761 3' -57.9 NC_005264.1 + 106858 0.66 0.836544
Target:  5'- uUCAuCUgCGGGGucauGGGCGGGCACGa -3'
miRNA:   3'- gGGUcGAgGCCCUu---CUUGCCCGUGUg -5'
24761 3' -57.9 NC_005264.1 + 160452 0.66 0.836544
Target:  5'- gCCGGCgCCGGGcuccuGCGGGCGacggcCACu -3'
miRNA:   3'- gGGUCGaGGCCCuucu-UGCCCGU-----GUG- -5'
24761 3' -57.9 NC_005264.1 + 130369 0.66 0.836544
Target:  5'- aCC-GUUCUGGcGAGGAACugccaucugGGGCAUGCg -3'
miRNA:   3'- gGGuCGAGGCC-CUUCUUG---------CCCGUGUG- -5'
24761 3' -57.9 NC_005264.1 + 93280 0.66 0.836544
Target:  5'- cCCCGGCUUCaGuGGAGGAAUGccucaaGGCGCu- -3'
miRNA:   3'- -GGGUCGAGG-C-CCUUCUUGC------CCGUGug -5'
24761 3' -57.9 NC_005264.1 + 43149 0.66 0.836544
Target:  5'- aCgGGUggagCgGGGAGGGGgGGGCGCGu -3'
miRNA:   3'- gGgUCGa---GgCCCUUCUUgCCCGUGUg -5'
24761 3' -57.9 NC_005264.1 + 14048 0.66 0.836544
Target:  5'- aCgUGGCggggCCGGGuGGGAACGuGCACGCc -3'
miRNA:   3'- -GgGUCGa---GGCCC-UUCUUGCcCGUGUG- -5'
24761 3' -57.9 NC_005264.1 + 162176 0.66 0.836544
Target:  5'- aCgGGUggagCgGGGAGGGGgGGGCGCGu -3'
miRNA:   3'- gGgUCGa---GgCCCUUCUUgCCCGUGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.