Results 21 - 40 of 76 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24761 | 3' | -57.9 | NC_005264.1 | + | 124107 | 0.68 | 0.757611 |
Target: 5'- gCCAGCccgUCCGGGGAGGGguccucuacgccUGGGgGCGa -3' miRNA: 3'- gGGUCG---AGGCCCUUCUU------------GCCCgUGUg -5' |
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24761 | 3' | -57.9 | NC_005264.1 | + | 123772 | 0.66 | 0.852317 |
Target: 5'- gCCGGCgUCCGGGGGuGGACcGcCGCGCg -3' miRNA: 3'- gGGUCG-AGGCCCUU-CUUGcCcGUGUG- -5' |
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24761 | 3' | -57.9 | NC_005264.1 | + | 122636 | 0.69 | 0.718428 |
Target: 5'- aCC-GC-CgCGGGGggccgcgAGGGCGGGCGCGCu -3' miRNA: 3'- gGGuCGaG-GCCCU-------UCUUGCCCGUGUG- -5' |
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24761 | 3' | -57.9 | NC_005264.1 | + | 122064 | 0.67 | 0.811566 |
Target: 5'- uCUCGGCgCCGcGGAAGAuguaGGGgACAUa -3' miRNA: 3'- -GGGUCGaGGC-CCUUCUug--CCCgUGUG- -5' |
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24761 | 3' | -57.9 | NC_005264.1 | + | 119118 | 0.68 | 0.729083 |
Target: 5'- gCgGGCUCUgcugGGGGAGGGCGaGGaCGCAUg -3' miRNA: 3'- gGgUCGAGG----CCCUUCUUGC-CC-GUGUG- -5' |
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24761 | 3' | -57.9 | NC_005264.1 | + | 118634 | 0.7 | 0.630047 |
Target: 5'- -aCAGCUCUGGGGAGGGgGGGgGgGa -3' miRNA: 3'- ggGUCGAGGCCCUUCUUgCCCgUgUg -5' |
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24761 | 3' | -57.9 | NC_005264.1 | + | 110819 | 0.75 | 0.38709 |
Target: 5'- gCCUAGCgUUCGGGucuGAGCGGGguCGCu -3' miRNA: 3'- -GGGUCG-AGGCCCuu-CUUGCCCguGUG- -5' |
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24761 | 3' | -57.9 | NC_005264.1 | + | 107209 | 0.67 | 0.785182 |
Target: 5'- uUCCGGCguaUGGGuacgcGGAGCGGuGCGCAa -3' miRNA: 3'- -GGGUCGag-GCCCu----UCUUGCC-CGUGUg -5' |
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24761 | 3' | -57.9 | NC_005264.1 | + | 106858 | 0.66 | 0.836544 |
Target: 5'- uUCAuCUgCGGGGucauGGGCGGGCACGa -3' miRNA: 3'- gGGUcGAgGCCCUu---CUUGCCCGUGUg -5' |
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24761 | 3' | -57.9 | NC_005264.1 | + | 105483 | 0.66 | 0.836544 |
Target: 5'- cUCCAGCgacgacggcgaUCCGGcGGAGGAagaGGauGCGCGCg -3' miRNA: 3'- -GGGUCG-----------AGGCC-CUUCUUg--CC--CGUGUG- -5' |
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24761 | 3' | -57.9 | NC_005264.1 | + | 102481 | 0.66 | 0.859919 |
Target: 5'- aCCAGUUCUGGu-GGcuCGGGCGCc- -3' miRNA: 3'- gGGUCGAGGCCcuUCuuGCCCGUGug -5' |
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24761 | 3' | -57.9 | NC_005264.1 | + | 101401 | 0.66 | 0.867324 |
Target: 5'- aCUCGGCgCC--GAGGAGCGGGC-CGCc -3' miRNA: 3'- -GGGUCGaGGccCUUCUUGCCCGuGUG- -5' |
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24761 | 3' | -57.9 | NC_005264.1 | + | 98231 | 0.67 | 0.802917 |
Target: 5'- gCCGcGCUgCGGaGAGGuuAUGGGCGCAa -3' miRNA: 3'- gGGU-CGAgGCC-CUUCu-UGCCCGUGUg -5' |
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24761 | 3' | -57.9 | NC_005264.1 | + | 98090 | 0.69 | 0.670085 |
Target: 5'- cCCCGGCcgccCCGGGGuu-ACcgGGGUACACa -3' miRNA: 3'- -GGGUCGa---GGCCCUucuUG--CCCGUGUG- -5' |
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24761 | 3' | -57.9 | NC_005264.1 | + | 93280 | 0.66 | 0.836544 |
Target: 5'- cCCCGGCUUCaGuGGAGGAAUGccucaaGGCGCu- -3' miRNA: 3'- -GGGUCGAGG-C-CCUUCUUGC------CCGUGug -5' |
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24761 | 3' | -57.9 | NC_005264.1 | + | 84076 | 0.72 | 0.502271 |
Target: 5'- cCCUGGCUCaUGcGGAGcAGCGGGCGCAUc -3' miRNA: 3'- -GGGUCGAG-GC-CCUUcUUGCCCGUGUG- -5' |
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24761 | 3' | -57.9 | NC_005264.1 | + | 80602 | 0.68 | 0.77245 |
Target: 5'- aCUCGGC-CCGGGggGGAgcguucuUGGGCcccgaggacgauggACGCg -3' miRNA: 3'- -GGGUCGaGGCCCuuCUU-------GCCCG--------------UGUG- -5' |
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24761 | 3' | -57.9 | NC_005264.1 | + | 79995 | 0.67 | 0.802917 |
Target: 5'- gCCGGC-CgCGcGGAAGAggagGCGcGGCACAUc -3' miRNA: 3'- gGGUCGaG-GC-CCUUCU----UGC-CCGUGUG- -5' |
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24761 | 3' | -57.9 | NC_005264.1 | + | 79093 | 0.66 | 0.859919 |
Target: 5'- gUCAGCUuaCCGGGGAG-ACGcuuaagcucGGCACGg -3' miRNA: 3'- gGGUCGA--GGCCCUUCuUGC---------CCGUGUg -5' |
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24761 | 3' | -57.9 | NC_005264.1 | + | 76694 | 0.69 | 0.670085 |
Target: 5'- gCCCAGCUUgGcGcGGAGCGcGGCGCAa -3' miRNA: 3'- -GGGUCGAGgCcCuUCUUGC-CCGUGUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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