Results 21 - 40 of 76 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24761 | 3' | -57.9 | NC_005264.1 | + | 122064 | 0.67 | 0.811566 |
Target: 5'- uCUCGGCgCCGcGGAAGAuguaGGGgACAUa -3' miRNA: 3'- -GGGUCGaGGC-CCUUCUug--CCCgUGUG- -5' |
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24761 | 3' | -57.9 | NC_005264.1 | + | 6010 | 0.66 | 0.844523 |
Target: 5'- cCCCgacgggcggggaGGCUCCGGGGAaAACcaacGGCGCGa -3' miRNA: 3'- -GGG------------UCGAGGCCCUUcUUGc---CCGUGUg -5' |
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24761 | 3' | -57.9 | NC_005264.1 | + | 41362 | 1.11 | 0.001473 |
Target: 5'- gCCCAGCUCCGGGAAGAACGGGCACACg -3' miRNA: 3'- -GGGUCGAGGCCCUUCUUGCCCGUGUG- -5' |
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24761 | 3' | -57.9 | NC_005264.1 | + | 25664 | 0.7 | 0.650094 |
Target: 5'- aUCGGCacgUCUGGGGgcagcagaaGGGACGGGaCGCGCa -3' miRNA: 3'- gGGUCG---AGGCCCU---------UCUUGCCC-GUGUG- -5' |
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24761 | 3' | -57.9 | NC_005264.1 | + | 5080 | 0.68 | 0.757611 |
Target: 5'- gCCAGCccgUCCGGGGAGGGguccucuacgccUGGGgGCGa -3' miRNA: 3'- gGGUCG---AGGCCCUUCUU------------GCCCgUGUg -5' |
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24761 | 3' | -57.9 | NC_005264.1 | + | 6126 | 0.66 | 0.859919 |
Target: 5'- aUCAGgUgCGGGAGGGcgaGGGcCGCGCg -3' miRNA: 3'- gGGUCgAgGCCCUUCUug-CCC-GUGUG- -5' |
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24761 | 3' | -57.9 | NC_005264.1 | + | 34251 | 0.7 | 0.650094 |
Target: 5'- aCCCGGCUUCuguaGcGAGGcGCGGGCgACGCg -3' miRNA: 3'- -GGGUCGAGGc---C-CUUCuUGCCCG-UGUG- -5' |
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24761 | 3' | -57.9 | NC_005264.1 | + | 4746 | 0.66 | 0.852317 |
Target: 5'- gCCGGCgUCCGGGGGuGGACcGcCGCGCg -3' miRNA: 3'- gGGUCG-AGGCCCUU-CUUGcCcGUGUG- -5' |
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24761 | 3' | -57.9 | NC_005264.1 | + | 101401 | 0.66 | 0.867324 |
Target: 5'- aCUCGGCgCC--GAGGAGCGGGC-CGCc -3' miRNA: 3'- -GGGUCGaGGccCUUCUUGCCCGuGUG- -5' |
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24761 | 3' | -57.9 | NC_005264.1 | + | 41861 | 0.68 | 0.738684 |
Target: 5'- --gAGCUCgGGGggGGgggcaACGGccGCGCACa -3' miRNA: 3'- gggUCGAGgCCCuuCU-----UGCC--CGUGUG- -5' |
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24761 | 3' | -57.9 | NC_005264.1 | + | 27919 | 0.72 | 0.530998 |
Target: 5'- gCCgAGCUCCuGGGGAcGAgcaguucccaACGGGCGcCGCg -3' miRNA: 3'- -GGgUCGAGG-CCCUU-CU----------UGCCCGU-GUG- -5' |
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24761 | 3' | -57.9 | NC_005264.1 | + | 43149 | 0.66 | 0.836544 |
Target: 5'- aCgGGUggagCgGGGAGGGGgGGGCGCGu -3' miRNA: 3'- gGgUCGa---GgCCCUUCUUgCCCGUGUg -5' |
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24761 | 3' | -57.9 | NC_005264.1 | + | 41425 | 0.66 | 0.836544 |
Target: 5'- gCCGGCgCCGGGcuccuGCGGGCGacggcCACu -3' miRNA: 3'- gGGUCGaGGCCCuucu-UGCCCGU-----GUG- -5' |
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24761 | 3' | -57.9 | NC_005264.1 | + | 141495 | 0.69 | 0.689959 |
Target: 5'- -gCGGC-CCGGGAcGAACGGcaGCGCAa -3' miRNA: 3'- ggGUCGaGGCCCUuCUUGCC--CGUGUg -5' |
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24761 | 3' | -57.9 | NC_005264.1 | + | 33928 | 0.71 | 0.590029 |
Target: 5'- gCCAGg-CUGGGAAGGcCGuGGCGCGCc -3' miRNA: 3'- gGGUCgaGGCCCUUCUuGC-CCGUGUG- -5' |
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24761 | 3' | -57.9 | NC_005264.1 | + | 122636 | 0.69 | 0.718428 |
Target: 5'- aCC-GC-CgCGGGGggccgcgAGGGCGGGCGCGCu -3' miRNA: 3'- gGGuCGaG-GCCCU-------UCUUGCCCGUGUG- -5' |
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24761 | 3' | -57.9 | NC_005264.1 | + | 145915 | 0.69 | 0.689959 |
Target: 5'- -aCAGCUCCGGcGgcGGgucagcGCGGGCAUg- -3' miRNA: 3'- ggGUCGAGGCC-CuuCU------UGCCCGUGug -5' |
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24761 | 3' | -57.9 | NC_005264.1 | + | 162176 | 0.66 | 0.836544 |
Target: 5'- aCgGGUggagCgGGGAGGGGgGGGCGCGu -3' miRNA: 3'- gGgUCGa---GgCCCUUCUUgCCCGUGUg -5' |
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24761 | 3' | -57.9 | NC_005264.1 | + | 543 | 0.67 | 0.819216 |
Target: 5'- aCCCAGCcaUCC-GGAAGAgacggcgACGuGGUACAg -3' miRNA: 3'- -GGGUCG--AGGcCCUUCU-------UGC-CCGUGUg -5' |
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24761 | 3' | -57.9 | NC_005264.1 | + | 150782 | 0.67 | 0.828387 |
Target: 5'- gCCUuuGGCUcgcaCCGGGAuGGuucGCGGGCGCu- -3' miRNA: 3'- -GGG--UCGA----GGCCCUuCU---UGCCCGUGug -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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