miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24762 5' -62.6 NC_005264.1 + 42701 0.66 0.666979
Target:  5'- -uCGCCgGCCGGCGcUCCGUccUCCUg -3'
miRNA:   3'- gcGCGGgUGGCCGCaGGGCAuaGGGA- -5'
24762 5' -62.6 NC_005264.1 + 123758 0.66 0.666979
Target:  5'- cCGCuGCCCgccgaGCCGGCGUCCgGggguggaCCg -3'
miRNA:   3'- -GCG-CGGG-----UGGCCGCAGGgCauag---GGa -5'
24762 5' -62.6 NC_005264.1 + 4732 0.66 0.666979
Target:  5'- cCGCuGCCCgccgaGCCGGCGUCCgGggguggaCCg -3'
miRNA:   3'- -GCG-CGGG-----UGGCCGCAGGgCauag---GGa -5'
24762 5' -62.6 NC_005264.1 + 118690 0.66 0.654441
Target:  5'- aCGCGCUCGCgCGGCuuaccugcccUCCCGcucguaaucgccgcUAUCCCg -3'
miRNA:   3'- -GCGCGGGUG-GCCGc---------AGGGC--------------AUAGGGa -5'
24762 5' -62.6 NC_005264.1 + 51844 0.66 0.647677
Target:  5'- gGCGCuCCGCgGGCGUCaCCGa--CUCUu -3'
miRNA:   3'- gCGCG-GGUGgCCGCAG-GGCauaGGGA- -5'
24762 5' -62.6 NC_005264.1 + 96154 0.66 0.638005
Target:  5'- aCGCccCCCGcCCGGCG-CCgGUAguUCCCUu -3'
miRNA:   3'- -GCGc-GGGU-GGCCGCaGGgCAU--AGGGA- -5'
24762 5' -62.6 NC_005264.1 + 24974 0.66 0.62833
Target:  5'- cCGCGagaCCugCGGuUGUCCCcGUAccCCCUg -3'
miRNA:   3'- -GCGCg--GGugGCC-GCAGGG-CAUa-GGGA- -5'
24762 5' -62.6 NC_005264.1 + 78659 0.66 0.627362
Target:  5'- uGUGCCUcgucccacuauguGCCGGCGUCuCCGUAgugaUCgCg -3'
miRNA:   3'- gCGCGGG-------------UGGCCGCAG-GGCAU----AGgGa -5'
24762 5' -62.6 NC_005264.1 + 35593 0.67 0.608993
Target:  5'- uGCGgCUucgGCCGauggccGCGUCuCCGUGUCCCc -3'
miRNA:   3'- gCGCgGG---UGGC------CGCAG-GGCAUAGGGa -5'
24762 5' -62.6 NC_005264.1 + 79735 0.67 0.608993
Target:  5'- gGCGCCCGUCGGCGUacaCCUGcgcuacguUGUUCCg -3'
miRNA:   3'- gCGCGGGUGGCCGCA---GGGC--------AUAGGGa -5'
24762 5' -62.6 NC_005264.1 + 143412 0.67 0.608993
Target:  5'- cCGCGCCCcgcggccacacCCGGCGcCUCGccUCCCc -3'
miRNA:   3'- -GCGCGGGu----------GGCCGCaGGGCauAGGGa -5'
24762 5' -62.6 NC_005264.1 + 154620 0.67 0.608993
Target:  5'- uGCGgCUucgGCCGauggccGCGUCuCCGUGUCCCc -3'
miRNA:   3'- gCGCgGG---UGGC------CGCAG-GGCAUAGGGa -5'
24762 5' -62.6 NC_005264.1 + 101962 0.67 0.589718
Target:  5'- cCGC-CUgGCCGGUGucaUCCCGUggCCCa -3'
miRNA:   3'- -GCGcGGgUGGCCGC---AGGGCAuaGGGa -5'
24762 5' -62.6 NC_005264.1 + 64681 0.67 0.589718
Target:  5'- uGgGCCUGCCGGCGggcaggCCGUGcucgCCCg -3'
miRNA:   3'- gCgCGGGUGGCCGCag----GGCAUa---GGGa -5'
24762 5' -62.6 NC_005264.1 + 108615 0.67 0.589718
Target:  5'- aGCGUgaaCgCACCGGCcgccgUCCGUAUCCCc -3'
miRNA:   3'- gCGCG---G-GUGGCCGca---GGGCAUAGGGa -5'
24762 5' -62.6 NC_005264.1 + 28521 0.67 0.589718
Target:  5'- uGCGaCCUACUGaGcCGUCCUGUGUCUg- -3'
miRNA:   3'- gCGC-GGGUGGC-C-GCAGGGCAUAGGga -5'
24762 5' -62.6 NC_005264.1 + 113240 0.67 0.570553
Target:  5'- aGCGCCCcCCGuCGUCCUG-GUCgCCg -3'
miRNA:   3'- gCGCGGGuGGCcGCAGGGCaUAG-GGa -5'
24762 5' -62.6 NC_005264.1 + 59710 0.68 0.561026
Target:  5'- gCGCGCCgCGCCGGCGgcuaCCGcg-CCg- -3'
miRNA:   3'- -GCGCGG-GUGGCCGCag--GGCauaGGga -5'
24762 5' -62.6 NC_005264.1 + 50213 0.68 0.561026
Target:  5'- aCGCGUCUgcguugcgugACCGGCGggcCCCGc-UCCCa -3'
miRNA:   3'- -GCGCGGG----------UGGCCGCa--GGGCauAGGGa -5'
24762 5' -62.6 NC_005264.1 + 134907 0.68 0.561026
Target:  5'- gGCGCCCGuuGGCGaaCUGcucGUCCCc -3'
miRNA:   3'- gCGCGGGUggCCGCagGGCa--UAGGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.