miRNA display CGI


Results 21 - 40 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24815 5' -59.9 NC_005284.1 + 46711 0.67 0.427961
Target:  5'- --uCGUCGuccgagaauaGCCGcCGCCAAccAUCCGGCg -3'
miRNA:   3'- cauGCGGC----------CGGCaGCGGUU--UGGGCCG- -5'
24815 5' -59.9 NC_005284.1 + 46439 0.66 0.485302
Target:  5'- -aACGaaCCGaucGCCGUCGCCGAAUgccgCCGaGCg -3'
miRNA:   3'- caUGC--GGC---CGGCAGCGGUUUG----GGC-CG- -5'
24815 5' -59.9 NC_005284.1 + 46351 0.66 0.475482
Target:  5'- cGU-CGCgGGC--UCGCCGGACCaucuCGGCa -3'
miRNA:   3'- -CAuGCGgCCGgcAGCGGUUUGG----GCCG- -5'
24815 5' -59.9 NC_005284.1 + 46146 0.76 0.116106
Target:  5'- uGUGCGCCcGCCGUCGCgCAccgcauugaaauacGAgCCGGCc -3'
miRNA:   3'- -CAUGCGGcCGGCAGCG-GU--------------UUgGGCCG- -5'
24815 5' -59.9 NC_005284.1 + 46033 0.7 0.2896
Target:  5'- uGU-CGCCGGgCGUCGagCAGGCCucgaCGGCa -3'
miRNA:   3'- -CAuGCGGCCgGCAGCg-GUUUGG----GCCG- -5'
24815 5' -59.9 NC_005284.1 + 45791 0.68 0.383365
Target:  5'- uUGCGCaGG-CGUCGgCAuGCUCGGCg -3'
miRNA:   3'- cAUGCGgCCgGCAGCgGUuUGGGCCG- -5'
24815 5' -59.9 NC_005284.1 + 45625 0.69 0.332521
Target:  5'- cUGCGCCGaacucuugcccauGCCG-CGCgCGAuagcauccgcgacACCCGGCa -3'
miRNA:   3'- cAUGCGGC-------------CGGCaGCG-GUU-------------UGGGCCG- -5'
24815 5' -59.9 NC_005284.1 + 45552 0.69 0.34117
Target:  5'- cUAUGCCgccgcguGGCgCGUCGCCcgcgcACUCGGCu -3'
miRNA:   3'- cAUGCGG-------CCG-GCAGCGGuu---UGGGCCG- -5'
24815 5' -59.9 NC_005284.1 + 45289 0.66 0.475482
Target:  5'- -gGCGCCGacccacGCUGUCGCC--GCCUGcGUc -3'
miRNA:   3'- caUGCGGC------CGGCAGCGGuuUGGGC-CG- -5'
24815 5' -59.9 NC_005284.1 + 45022 0.66 0.465763
Target:  5'- -gACGUgagcuUGcGCCGUCGCCucgaccGCCCGcGCu -3'
miRNA:   3'- caUGCG-----GC-CGGCAGCGGuu----UGGGC-CG- -5'
24815 5' -59.9 NC_005284.1 + 44661 0.72 0.198891
Target:  5'- -aGCGCCGucugcGCCGUCGCCGcGCUuuCGGUc -3'
miRNA:   3'- caUGCGGC-----CGGCAGCGGUuUGG--GCCG- -5'
24815 5' -59.9 NC_005284.1 + 44562 0.7 0.262611
Target:  5'- -aGCGCCaccguGCCcacgGUCGCCAGAauuCCCGGUa -3'
miRNA:   3'- caUGCGGc----CGG----CAGCGGUUU---GGGCCG- -5'
24815 5' -59.9 NC_005284.1 + 44342 0.66 0.495217
Target:  5'- uUGCGCCGcCCGcgUCGCCAAAuUCCGa- -3'
miRNA:   3'- cAUGCGGCcGGC--AGCGGUUU-GGGCcg -5'
24815 5' -59.9 NC_005284.1 + 43193 0.74 0.14133
Target:  5'- -gACGCuCGGCCGcguagUCGCCGAGCUCcGCg -3'
miRNA:   3'- caUGCG-GCCGGC-----AGCGGUUUGGGcCG- -5'
24815 5' -59.9 NC_005284.1 + 42556 0.72 0.204077
Target:  5'- cUGCGCCGggauGCUGUCGCuCGuggacguGCCCGGUc -3'
miRNA:   3'- cAUGCGGC----CGGCAGCG-GUu------UGGGCCG- -5'
24815 5' -59.9 NC_005284.1 + 42273 0.66 0.475482
Target:  5'- uGUGCGCCGGUCGucgaggUCGUCAggAGCUUuucgcgugaGGCg -3'
miRNA:   3'- -CAUGCGGCCGGC------AGCGGU--UUGGG---------CCG- -5'
24815 5' -59.9 NC_005284.1 + 42116 0.75 0.123563
Target:  5'- --cCGCUGgguguaGCCGUCGCCGAACUgGGCu -3'
miRNA:   3'- cauGCGGC------CGGCAGCGGUUUGGgCCG- -5'
24815 5' -59.9 NC_005284.1 + 41597 0.66 0.485302
Target:  5'- cGUACGCgcgcgaGGCCG-CGCCGAGUgCGaGCu -3'
miRNA:   3'- -CAUGCGg-----CCGGCaGCGGUUUGgGC-CG- -5'
24815 5' -59.9 NC_005284.1 + 40530 0.68 0.374823
Target:  5'- -aACGCCGcauCCGUC-UCAagcAACCCGGCc -3'
miRNA:   3'- caUGCGGCc--GGCAGcGGU---UUGGGCCG- -5'
24815 5' -59.9 NC_005284.1 + 39793 0.67 0.427961
Target:  5'- -gGCGUCGGUCGUauucgaGCUucAACCgGGCc -3'
miRNA:   3'- caUGCGGCCGGCAg-----CGGu-UUGGgCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.