miRNA display CGI


Results 1 - 20 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24817 3' -55 NC_005284.1 + 37815 0.65 0.773438
Target:  5'- cGUU-CGGCGuGAUGCGGCGCa--CGCg -3'
miRNA:   3'- -CAGuGCUGCuUUAUGCCGCGgccGCG- -5'
24817 3' -55 NC_005284.1 + 36854 0.65 0.773438
Target:  5'- --gGCGGCGAuuguCGGCGCCuugucgaGCGUg -3'
miRNA:   3'- cagUGCUGCUuuauGCCGCGGc------CGCG- -5'
24817 3' -55 NC_005284.1 + 47945 0.65 0.773438
Target:  5'- -aCACGAuCGAuc-GCGcGCGCCaacucGGUGCg -3'
miRNA:   3'- caGUGCU-GCUuuaUGC-CGCGG-----CCGCG- -5'
24817 3' -55 NC_005284.1 + 30447 0.65 0.773438
Target:  5'- uUCGCGAgucgcCGAuucguGUGCuGCcgGCCGGCGUg -3'
miRNA:   3'- cAGUGCU-----GCUu----UAUGcCG--CGGCCGCG- -5'
24817 3' -55 NC_005284.1 + 10450 0.65 0.773438
Target:  5'- uUgGCGACGcgg-GCGGCGCaaagugucaUGGUGCc -3'
miRNA:   3'- cAgUGCUGCuuuaUGCCGCG---------GCCGCG- -5'
24817 3' -55 NC_005284.1 + 30291 0.65 0.773438
Target:  5'- cUCGCG-CGA--UACGGUugagGCCGGCu- -3'
miRNA:   3'- cAGUGCuGCUuuAUGCCG----CGGCCGcg -5'
24817 3' -55 NC_005284.1 + 7966 0.65 0.773438
Target:  5'- --gACGACGAAAcgGCGGUuCCGagaaguucGCGCg -3'
miRNA:   3'- cagUGCUGCUUUa-UGCCGcGGC--------CGCG- -5'
24817 3' -55 NC_005284.1 + 21720 0.65 0.773438
Target:  5'- aUCACGAaugcguguaCGAGA-ACGGCGauGGUGUg -3'
miRNA:   3'- cAGUGCU---------GCUUUaUGCCGCggCCGCG- -5'
24817 3' -55 NC_005284.1 + 37091 0.66 0.763362
Target:  5'- -gCGcCGGCGAGAUucAgGGCGUC-GCGCa -3'
miRNA:   3'- caGU-GCUGCUUUA--UgCCGCGGcCGCG- -5'
24817 3' -55 NC_005284.1 + 38690 0.66 0.763362
Target:  5'- --aACGGCaacGAGUGCGGCGCCGagaauCGUg -3'
miRNA:   3'- cagUGCUGc--UUUAUGCCGCGGCc----GCG- -5'
24817 3' -55 NC_005284.1 + 36075 0.66 0.763362
Target:  5'- aGUUGCGA-GAGcuugauuucGUcCGGUGCgGGCGCg -3'
miRNA:   3'- -CAGUGCUgCUU---------UAuGCCGCGgCCGCG- -5'
24817 3' -55 NC_005284.1 + 4630 0.66 0.763362
Target:  5'- --uGCGACGGucggcaGCGGCGUgagCGGCaGCa -3'
miRNA:   3'- cagUGCUGCUuua---UGCCGCG---GCCG-CG- -5'
24817 3' -55 NC_005284.1 + 6337 0.66 0.757251
Target:  5'- aUC-CGGCGAAGcUgguacugcacugcacGCGGCGaUUGGCGCg -3'
miRNA:   3'- cAGuGCUGCUUU-A---------------UGCCGC-GGCCGCG- -5'
24817 3' -55 NC_005284.1 + 22013 0.66 0.753152
Target:  5'- --aACGA-GAAAcAgGGCGaCCGGCGUg -3'
miRNA:   3'- cagUGCUgCUUUaUgCCGC-GGCCGCG- -5'
24817 3' -55 NC_005284.1 + 25023 0.66 0.753152
Target:  5'- ---cUGGCGGgaaaGAUGCGuaucccgcucGCGCCGGUGCu -3'
miRNA:   3'- caguGCUGCU----UUAUGC----------CGCGGCCGCG- -5'
24817 3' -55 NC_005284.1 + 9535 0.66 0.753152
Target:  5'- cGUCGaggaGACGAucaagcaacacGAgGCGGCGCaGGCaGCg -3'
miRNA:   3'- -CAGUg---CUGCU-----------UUaUGCCGCGgCCG-CG- -5'
24817 3' -55 NC_005284.1 + 53684 0.66 0.753152
Target:  5'- aGUCGuCGACGGgc-ACGGCaagugcGCUGGCGa -3'
miRNA:   3'- -CAGU-GCUGCUuuaUGCCG------CGGCCGCg -5'
24817 3' -55 NC_005284.1 + 21308 0.66 0.742821
Target:  5'- --aACGGCGAggcgguucAAUGCgGGCGaCUGGCGg -3'
miRNA:   3'- cagUGCUGCU--------UUAUG-CCGC-GGCCGCg -5'
24817 3' -55 NC_005284.1 + 390 0.66 0.741782
Target:  5'- --uGCGACcguugugaaGGAAgcgGCGGCGCaaauggcgaguuuCGGCGCa -3'
miRNA:   3'- cagUGCUG---------CUUUa--UGCCGCG-------------GCCGCG- -5'
24817 3' -55 NC_005284.1 + 17968 0.66 0.740742
Target:  5'- uUCACGGCGAuucugccguCGGguauUGCCcaGGCGCg -3'
miRNA:   3'- cAGUGCUGCUuuau-----GCC----GCGG--CCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.