miRNA display CGI


Results 21 - 40 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24817 3' -55 NC_005284.1 + 35846 0.67 0.689731
Target:  5'- -cCAuCGGCGggGUGauuaGGuCGaUCGGCGCg -3'
miRNA:   3'- caGU-GCUGCuuUAUg---CC-GC-GGCCGCG- -5'
24817 3' -55 NC_005284.1 + 36854 0.65 0.773438
Target:  5'- --gGCGGCGAuuguCGGCGCCuugucgaGCGUg -3'
miRNA:   3'- cagUGCUGCUuuauGCCGCGGc------CGCG- -5'
24817 3' -55 NC_005284.1 + 53553 0.78 0.173599
Target:  5'- cGUgAUGAUGAAcaugaGCGGCuGCCGGCGCg -3'
miRNA:   3'- -CAgUGCUGCUUua---UGCCG-CGGCCGCG- -5'
24817 3' -55 NC_005284.1 + 23861 0.72 0.417278
Target:  5'- --gGCGGCGAAA-GCGGC-CaCGGCGCc -3'
miRNA:   3'- cagUGCUGCUUUaUGCCGcG-GCCGCG- -5'
24817 3' -55 NC_005284.1 + 22088 0.68 0.635265
Target:  5'- -gCGCGACGGAAaa--GCGCUuGGCGCu -3'
miRNA:   3'- caGUGCUGCUUUaugcCGCGG-CCGCG- -5'
24817 3' -55 NC_005284.1 + 37815 0.65 0.773438
Target:  5'- cGUU-CGGCGuGAUGCGGCGCa--CGCg -3'
miRNA:   3'- -CAGuGCUGCuUUAUGCCGCGgccGCG- -5'
24817 3' -55 NC_005284.1 + 27091 0.72 0.426703
Target:  5'- aUCGCGcCGGAAUcaggcaGCGGCGaCCcGCGCg -3'
miRNA:   3'- cAGUGCuGCUUUA------UGCCGC-GGcCGCG- -5'
24817 3' -55 NC_005284.1 + 47945 0.65 0.773438
Target:  5'- -aCACGAuCGAuc-GCGcGCGCCaacucGGUGCg -3'
miRNA:   3'- caGUGCU-GCUuuaUGC-CGCGG-----CCGCG- -5'
24817 3' -55 NC_005284.1 + 21720 0.65 0.773438
Target:  5'- aUCACGAaugcguguaCGAGA-ACGGCGauGGUGUg -3'
miRNA:   3'- cAGUGCU---------GCUUUaUGCCGCggCCGCG- -5'
24817 3' -55 NC_005284.1 + 11980 0.67 0.710142
Target:  5'- cUCACGAUGGcc-GCuGCuaucacguagaauGCCGGCGCg -3'
miRNA:   3'- cAGUGCUGCUuuaUGcCG-------------CGGCCGCG- -5'
24817 3' -55 NC_005284.1 + 27850 0.68 0.602469
Target:  5'- aGUCGCcaGACGAc--GCGcCGcCCGGCGCa -3'
miRNA:   3'- -CAGUG--CUGCUuuaUGCcGC-GGCCGCG- -5'
24817 3' -55 NC_005284.1 + 36512 0.7 0.506297
Target:  5'- uGUCGagaGGCGGAcguucgACGGCGgCGGCuGCa -3'
miRNA:   3'- -CAGUg--CUGCUUua----UGCCGCgGCCG-CG- -5'
24817 3' -55 NC_005284.1 + 9357 0.72 0.417278
Target:  5'- aUCGCGACGccgcGAAUAuCGuCGCCGGcCGCg -3'
miRNA:   3'- cAGUGCUGC----UUUAU-GCcGCGGCC-GCG- -5'
24817 3' -55 NC_005284.1 + 33147 0.72 0.390681
Target:  5'- -gCGCGGCGAucgcacgcugcuCGGCGUCGaGCGCg -3'
miRNA:   3'- caGUGCUGCUuuau--------GCCGCGGC-CGCG- -5'
24817 3' -55 NC_005284.1 + 23331 0.79 0.143443
Target:  5'- -gCACGGCGGucAAUugGGgGcCCGGCGCg -3'
miRNA:   3'- caGUGCUGCU--UUAugCCgC-GGCCGCG- -5'
24817 3' -55 NC_005284.1 + 46062 0.67 0.700503
Target:  5'- uUCGCGGauCGAAcUGCGcgccGCGUCGaGCGCg -3'
miRNA:   3'- cAGUGCU--GCUUuAUGC----CGCGGC-CGCG- -5'
24817 3' -55 NC_005284.1 + 38690 0.66 0.763362
Target:  5'- --aACGGCaacGAGUGCGGCGCCGagaauCGUg -3'
miRNA:   3'- cagUGCUGc--UUUAUGCCGCGGCc----GCG- -5'
24817 3' -55 NC_005284.1 + 17695 0.66 0.732379
Target:  5'- -gCGCGACGcccuGAAUcu--CGCCGGCGCg -3'
miRNA:   3'- caGUGCUGC----UUUAugccGCGGCCGCG- -5'
24817 3' -55 NC_005284.1 + 8570 0.69 0.559129
Target:  5'- cGUUACGGCGAauacgaccgAAUACGacCGCCGcauGCGCg -3'
miRNA:   3'- -CAGUGCUGCU---------UUAUGCc-GCGGC---CGCG- -5'
24817 3' -55 NC_005284.1 + 48857 0.72 0.398817
Target:  5'- -cCGCGagGCGAAAgcgGCGGagaaGUCGGCGCc -3'
miRNA:   3'- caGUGC--UGCUUUa--UGCCg---CGGCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.