miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24818 3' -54.9 NC_005284.1 + 15594 0.66 0.730856
Target:  5'- -cUCGACgucgGCCGcgacgugacguugcaGGUCGGCGAcgugcuGCUGAu -3'
miRNA:   3'- cuAGCUGa---CGGU---------------UCAGCCGUU------CGGCU- -5'
24818 3' -54.9 NC_005284.1 + 46565 0.66 0.725511
Target:  5'- cGAUcCGAUguUGCCGagcauggcggcgcAGUgGGCAAcGCCGAa -3'
miRNA:   3'- -CUA-GCUG--ACGGU-------------UCAgCCGUU-CGGCU- -5'
24818 3' -54.9 NC_005284.1 + 54347 0.66 0.725511
Target:  5'- --cCGGCUcGCCGGGUCGagccccaGCAuugcGCCGAa -3'
miRNA:   3'- cuaGCUGA-CGGUUCAGC-------CGUu---CGGCU- -5'
24818 3' -54.9 NC_005284.1 + 16843 0.66 0.71583
Target:  5'- cGAUCGACuUGUC-GGUcgaCGGCGGGUCGu -3'
miRNA:   3'- -CUAGCUG-ACGGuUCA---GCCGUUCGGCu -5'
24818 3' -54.9 NC_005284.1 + 58 0.66 0.71583
Target:  5'- --gCGACagUGCCGGGcCGGggcagaaaaccCAAGCCGAc -3'
miRNA:   3'- cuaGCUG--ACGGUUCaGCC-----------GUUCGGCU- -5'
24818 3' -54.9 NC_005284.1 + 5452 0.66 0.71583
Target:  5'- --gUGACcggUGCauuAGUCGaGCAAGCCGGc -3'
miRNA:   3'- cuaGCUG---ACGgu-UCAGC-CGUUCGGCU- -5'
24818 3' -54.9 NC_005284.1 + 30038 0.66 0.694087
Target:  5'- uAUCGACcggGUCGGGUguaGCGGGCCGAa -3'
miRNA:   3'- cUAGCUGa--CGGUUCAgc-CGUUCGGCU- -5'
24818 3' -54.9 NC_005284.1 + 8421 0.66 0.694087
Target:  5'- uGUCGGacaugaUGCCGAGauggucCGGCGAGCCc- -3'
miRNA:   3'- cUAGCUg-----ACGGUUCa-----GCCGUUCGGcu -5'
24818 3' -54.9 NC_005284.1 + 44271 0.67 0.683118
Target:  5'- cGAUCGagcGCUGCCugaUCGGCAu-CCGAg -3'
miRNA:   3'- -CUAGC---UGACGGuucAGCCGUucGGCU- -5'
24818 3' -54.9 NC_005284.1 + 19017 0.67 0.683118
Target:  5'- uGGUCG-CUG-CAGG-CGGCGAucGCCGAg -3'
miRNA:   3'- -CUAGCuGACgGUUCaGCCGUU--CGGCU- -5'
24818 3' -54.9 NC_005284.1 + 45880 0.67 0.683118
Target:  5'- -cUCGGCUGUCGcGUCGaGCGguuGCCGu -3'
miRNA:   3'- cuAGCUGACGGUuCAGC-CGUu--CGGCu -5'
24818 3' -54.9 NC_005284.1 + 21666 0.67 0.672099
Target:  5'- --aCGAUgccGCCGcGUCGGCGguGGCCGc -3'
miRNA:   3'- cuaGCUGa--CGGUuCAGCCGU--UCGGCu -5'
24818 3' -54.9 NC_005284.1 + 16676 0.67 0.672099
Target:  5'- cGUCGAgCgugagGCCGGcGUCGGCGuGCCGc -3'
miRNA:   3'- cUAGCU-Ga----CGGUU-CAGCCGUuCGGCu -5'
24818 3' -54.9 NC_005284.1 + 21551 0.67 0.661043
Target:  5'- cAUCGGCuUGCCGA--CGaGCAGGCCGc -3'
miRNA:   3'- cUAGCUG-ACGGUUcaGC-CGUUCGGCu -5'
24818 3' -54.9 NC_005284.1 + 26098 0.67 0.649958
Target:  5'- aAUUGGCUgacaGCCA--UCGGCAAGCCc- -3'
miRNA:   3'- cUAGCUGA----CGGUucAGCCGUUCGGcu -5'
24818 3' -54.9 NC_005284.1 + 6859 0.67 0.649958
Target:  5'- cGAUCGugUGCUcgGAGggcggCGGUGAGCgUGAu -3'
miRNA:   3'- -CUAGCugACGG--UUCa----GCCGUUCG-GCU- -5'
24818 3' -54.9 NC_005284.1 + 17479 0.67 0.638857
Target:  5'- -uUCGuACUggggcGCCGGGUCGGUGgucgcgucGGCCGAu -3'
miRNA:   3'- cuAGC-UGA-----CGGUUCAGCCGU--------UCGGCU- -5'
24818 3' -54.9 NC_005284.1 + 19983 0.67 0.637747
Target:  5'- uGAUCGGCgaccgcGCCuaugacgAGGUCGGCGAagcuGCUGAu -3'
miRNA:   3'- -CUAGCUGa-----CGG-------UUCAGCCGUU----CGGCU- -5'
24818 3' -54.9 NC_005284.1 + 30394 0.68 0.616647
Target:  5'- --gCGugUGCU-GGUCGGCAuGUCGAu -3'
miRNA:   3'- cuaGCugACGGuUCAGCCGUuCGGCU- -5'
24818 3' -54.9 NC_005284.1 + 47287 0.68 0.605558
Target:  5'- cGUCGACcgagaauucGCCcGGaUCgGGCAAGCCGAg -3'
miRNA:   3'- cUAGCUGa--------CGGuUC-AG-CCGUUCGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.