miRNA display CGI


Results 1 - 20 of 67 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24819 5' -55 NC_005284.1 + 32989 0.65 0.763367
Target:  5'- gGUCACUCGCucCGCaGCGGGCgaugCU-GCu -3'
miRNA:   3'- -CAGUGAGCGc-GCG-CGCUUGaa--GAgCG- -5'
24819 5' -55 NC_005284.1 + 39524 0.65 0.763367
Target:  5'- --uGCUCGC-CGCGgcCGAuguGCUUCaUCGCa -3'
miRNA:   3'- cagUGAGCGcGCGC--GCU---UGAAG-AGCG- -5'
24819 5' -55 NC_005284.1 + 13401 0.65 0.759281
Target:  5'- -cCACUCGCGaaacaucgugacCGCGGGCgugUCUCGg -3'
miRNA:   3'- caGUGAGCGCgc----------GCGCUUGa--AGAGCg -5'
24819 5' -55 NC_005284.1 + 31010 0.66 0.754145
Target:  5'- -cCGC-CGUGCGUGCGGAaguugccgguuggCUCGCu -3'
miRNA:   3'- caGUGaGCGCGCGCGCUUgaa----------GAGCG- -5'
24819 5' -55 NC_005284.1 + 8972 0.66 0.753114
Target:  5'- --uGCUCGaguGCGUGCGGACaccUUCGCc -3'
miRNA:   3'- cagUGAGCg--CGCGCGCUUGaa-GAGCG- -5'
24819 5' -55 NC_005284.1 + 24373 0.66 0.753114
Target:  5'- cUCGCcgUCGCGCaCGCGGACga-UCGa -3'
miRNA:   3'- cAGUG--AGCGCGcGCGCUUGaagAGCg -5'
24819 5' -55 NC_005284.1 + 8241 0.66 0.753114
Target:  5'- uGUCGCUCGCGC-UGCGg----CUCGg -3'
miRNA:   3'- -CAGUGAGCGCGcGCGCuugaaGAGCg -5'
24819 5' -55 NC_005284.1 + 47338 0.66 0.753114
Target:  5'- cGUCGCUCGCGaacgucguCGCGuCGAuuuCUUC-CGa -3'
miRNA:   3'- -CAGUGAGCGC--------GCGC-GCUu--GAAGaGCg -5'
24819 5' -55 NC_005284.1 + 14625 0.66 0.742738
Target:  5'- -aCGCUCGCGCGCuaccucgacgccGUGAAUUUUcCGg -3'
miRNA:   3'- caGUGAGCGCGCG------------CGCUUGAAGaGCg -5'
24819 5' -55 NC_005284.1 + 26305 0.66 0.742738
Target:  5'- -gCACUgCgGCGCGUGCGAGCggaaaGCa -3'
miRNA:   3'- caGUGA-G-CGCGCGCGCUUGaagagCG- -5'
24819 5' -55 NC_005284.1 + 33277 0.66 0.742738
Target:  5'- --uGCU-GC-CGCGCGuGCUUCUUGCc -3'
miRNA:   3'- cagUGAgCGcGCGCGCuUGAAGAGCG- -5'
24819 5' -55 NC_005284.1 + 1254 0.66 0.736458
Target:  5'- aUCACgacUGCGgGCGCGAacaucgaggggccguGCUUCgacaagCGCc -3'
miRNA:   3'- cAGUGa--GCGCgCGCGCU---------------UGAAGa-----GCG- -5'
24819 5' -55 NC_005284.1 + 54668 0.66 0.732251
Target:  5'- cUUAUUCaGCGCGCGUuuaccgGGAUUUCcCGCa -3'
miRNA:   3'- cAGUGAG-CGCGCGCG------CUUGAAGaGCG- -5'
24819 5' -55 NC_005284.1 + 41035 0.66 0.732251
Target:  5'- uUCACgcauacUGCGCGC-CGAcguUUCUCGCg -3'
miRNA:   3'- cAGUGa-----GCGCGCGcGCUug-AAGAGCG- -5'
24819 5' -55 NC_005284.1 + 6625 0.66 0.721663
Target:  5'- cGUCACUUcgccaGCGCGCGCcgGAAUgggCUCu- -3'
miRNA:   3'- -CAGUGAG-----CGCGCGCG--CUUGaa-GAGcg -5'
24819 5' -55 NC_005284.1 + 53161 0.66 0.721663
Target:  5'- --aGCUUGCGCGCcaugucgagcGCGAGCacgcaaUCUUGCc -3'
miRNA:   3'- cagUGAGCGCGCG----------CGCUUGa-----AGAGCG- -5'
24819 5' -55 NC_005284.1 + 11267 0.66 0.721663
Target:  5'- --gGCUCGCGCggcgaagggGgGCGGugUUCauUCGCu -3'
miRNA:   3'- cagUGAGCGCG---------CgCGCUugAAG--AGCG- -5'
24819 5' -55 NC_005284.1 + 10676 0.66 0.710987
Target:  5'- -gCGC-CGCGgGCGCGAucgacacgGCgggcCUCGCu -3'
miRNA:   3'- caGUGaGCGCgCGCGCU--------UGaa--GAGCG- -5'
24819 5' -55 NC_005284.1 + 47950 0.66 0.710987
Target:  5'- aUCGaUCGCGCGCGCcAACUcggUGCg -3'
miRNA:   3'- cAGUgAGCGCGCGCGcUUGAagaGCG- -5'
24819 5' -55 NC_005284.1 + 10372 0.66 0.707769
Target:  5'- aGUCGCcaacgaggcaguaaUCGCGCGuCGaCGAACUcaUCGUu -3'
miRNA:   3'- -CAGUG--------------AGCGCGC-GC-GCUUGAagAGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.