miRNA display CGI


Results 21 - 40 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24820 5' -60.4 NC_005284.1 + 41610 0.7 0.246869
Target:  5'- gGCCGcGCCG-AGUGCGAGCuccgacacGCAUCg -3'
miRNA:   3'- aCGGCuCGGCgUCGCGCUCGc-------UGUAG- -5'
24820 5' -60.4 NC_005284.1 + 41373 0.67 0.372382
Target:  5'- cGCCGAGacacgcCCGCGGUcacgauguuucGCGAGUGGCu-- -3'
miRNA:   3'- aCGGCUC------GGCGUCG-----------CGCUCGCUGuag -5'
24820 5' -60.4 NC_005284.1 + 39817 0.66 0.420394
Target:  5'- -aCCGGGCCGCgugccgcauugcaugGGCGCGGcCGAUGUUc -3'
miRNA:   3'- acGGCUCGGCG---------------UCGCGCUcGCUGUAG- -5'
24820 5' -60.4 NC_005284.1 + 39430 0.68 0.331373
Target:  5'- aUGCCGAucgagccaucgGCCuGCAcGC-CGAGCGACAcgaUCa -3'
miRNA:   3'- -ACGGCU-----------CGG-CGU-CGcGCUCGCUGU---AG- -5'
24820 5' -60.4 NC_005284.1 + 38976 0.67 0.347369
Target:  5'- aUGCUGAuCCGCGggcuGCGCGcuGGCGACGc- -3'
miRNA:   3'- -ACGGCUcGGCGU----CGCGC--UCGCUGUag -5'
24820 5' -60.4 NC_005284.1 + 38534 0.66 0.43438
Target:  5'- aGCCGAuagugauGCCGUAG-GCGAG-GAuCAUCc -3'
miRNA:   3'- aCGGCU-------CGGCGUCgCGCUCgCU-GUAG- -5'
24820 5' -60.4 NC_005284.1 + 37868 0.67 0.389725
Target:  5'- aGCuCGAuCCGaugcgAGCGCucauaGAGCGACGUCg -3'
miRNA:   3'- aCG-GCUcGGCg----UCGCG-----CUCGCUGUAG- -5'
24820 5' -60.4 NC_005284.1 + 37446 0.67 0.354745
Target:  5'- aGCCG-GCCGCgaggaacaucgucGGCGCGAG-GAUcagaAUCa -3'
miRNA:   3'- aCGGCuCGGCG-------------UCGCGCUCgCUG----UAG- -5'
24820 5' -60.4 NC_005284.1 + 37046 0.74 0.127682
Target:  5'- cGcCCGAGCCGguGCGCcugcgccuGCGACGUg -3'
miRNA:   3'- aC-GGCUCGGCguCGCGcu------CGCUGUAg -5'
24820 5' -60.4 NC_005284.1 + 36892 0.66 0.407589
Target:  5'- cGCC-AGCCGCuGCGCGGauGCGcCcgCc -3'
miRNA:   3'- aCGGcUCGGCGuCGCGCU--CGCuGuaG- -5'
24820 5' -60.4 NC_005284.1 + 36304 0.67 0.389725
Target:  5'- cGCCGAGCgCGUucucGGCGCGcacccgcGCGAgGUa -3'
miRNA:   3'- aCGGCUCG-GCG----UCGCGCu------CGCUgUAg -5'
24820 5' -60.4 NC_005284.1 + 33630 0.72 0.181016
Target:  5'- uUGCuCGAGCCGC-GCGCG-GCauuCAUCa -3'
miRNA:   3'- -ACG-GCUCGGCGuCGCGCuCGcu-GUAG- -5'
24820 5' -60.4 NC_005284.1 + 33498 0.67 0.36391
Target:  5'- cGCCGuugugcuGCCGCAGUagGCGcGCGGCc-- -3'
miRNA:   3'- aCGGCu------CGGCGUCG--CGCuCGCUGuag -5'
24820 5' -60.4 NC_005284.1 + 33171 0.68 0.308408
Target:  5'- cGUCGAG-CGCGGCGC--GCGAgAUCu -3'
miRNA:   3'- aCGGCUCgGCGUCGCGcuCGCUgUAG- -5'
24820 5' -60.4 NC_005284.1 + 33127 0.68 0.331373
Target:  5'- cGCCGAcGCgGCGGCaucguGCGcGGCGAUcgCa -3'
miRNA:   3'- aCGGCU-CGgCGUCG-----CGC-UCGCUGuaG- -5'
24820 5' -60.4 NC_005284.1 + 32789 0.66 0.425026
Target:  5'- cUGCCGgugcgucGGCCugcGCGGguUGCgGGGCGGCGUCg -3'
miRNA:   3'- -ACGGC-------UCGG---CGUC--GCG-CUCGCUGUAG- -5'
24820 5' -60.4 NC_005284.1 + 31474 0.67 0.380988
Target:  5'- cGCCGuGCCGCcggaaaAGCGCGcauuGCGcGCcUCg -3'
miRNA:   3'- aCGGCuCGGCG------UCGCGCu---CGC-UGuAG- -5'
24820 5' -60.4 NC_005284.1 + 29736 0.71 0.190796
Target:  5'- cGUCGGGgCGCcgaacagcaccGGCGCGAGCGggauacGCAUCu -3'
miRNA:   3'- aCGGCUCgGCG-----------UCGCGCUCGC------UGUAG- -5'
24820 5' -60.4 NC_005284.1 + 27993 0.71 0.21729
Target:  5'- cGCgCGAuGuuGCAGCucuaucccGCGGGCGACAUg -3'
miRNA:   3'- aCG-GCU-CggCGUCG--------CGCUCGCUGUAg -5'
24820 5' -60.4 NC_005284.1 + 26789 0.75 0.102496
Target:  5'- cGCCcgcgggauaGAGCUGCAacaucGCGCGAGCGGCuUCa -3'
miRNA:   3'- aCGG---------CUCGGCGU-----CGCGCUCGCUGuAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.