Results 1 - 20 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
24821 | 3' | -53.2 | NC_005284.1 | + | 46752 | 0.66 | 0.85575 |
Target: 5'- aCGAagucgGCGCCGAGUcacgggaacggUCACGGgauggugcuUGCCGg -3' miRNA: 3'- cGCUg----UGCGGCUCAa----------AGUGCU---------ACGGC- -5' |
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24821 | 3' | -53.2 | NC_005284.1 | + | 35378 | 0.66 | 0.85575 |
Target: 5'- aCGGCGCGCCGA---UCACGccUGCa- -3' miRNA: 3'- cGCUGUGCGGCUcaaAGUGCu-ACGgc -5' |
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24821 | 3' | -53.2 | NC_005284.1 | + | 14583 | 0.66 | 0.835859 |
Target: 5'- cGCGGCgagggagccagaggACGCCgGAGUUggUCGCGAcGCaCGu -3' miRNA: 3'- -CGCUG--------------UGCGG-CUCAA--AGUGCUaCG-GC- -5' |
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24821 | 3' | -53.2 | NC_005284.1 | + | 30428 | 0.66 | 0.829573 |
Target: 5'- cGCGACgGCGagGugcuGUUUCGCGAgucGCCGa -3' miRNA: 3'- -CGCUG-UGCggCu---CAAAGUGCUa--CGGC- -5' |
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24821 | 3' | -53.2 | NC_005284.1 | + | 16715 | 0.66 | 0.827758 |
Target: 5'- cGCGACGaGCCacaucggCACGAUGCUGu -3' miRNA: 3'- -CGCUGUgCGGcucaaa-GUGCUACGGC- -5' |
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24821 | 3' | -53.2 | NC_005284.1 | + | 20948 | 0.66 | 0.820417 |
Target: 5'- cGCuGCACGCCGcGUgaacuggagcaUCACGAUGgCUGa -3' miRNA: 3'- -CGcUGUGCGGCuCAa----------AGUGCUAC-GGC- -5' |
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24821 | 3' | -53.2 | NC_005284.1 | + | 18025 | 0.67 | 0.811061 |
Target: 5'- gGCGACAcggucacgcuCGCCGAGcgcuuCGAcGCCGa -3' miRNA: 3'- -CGCUGU----------GCGGCUCaaaguGCUaCGGC- -5' |
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24821 | 3' | -53.2 | NC_005284.1 | + | 44211 | 0.67 | 0.811061 |
Target: 5'- cGCGAUuucucgucgACGCCGAGgUUCgacgucuugagGCGAUccagGCCGg -3' miRNA: 3'- -CGCUG---------UGCGGCUCaAAG-----------UGCUA----CGGC- -5' |
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24821 | 3' | -53.2 | NC_005284.1 | + | 43453 | 0.67 | 0.811061 |
Target: 5'- uCGACGCGC--AGUUgCGCGAuccgcUGCCGg -3' miRNA: 3'- cGCUGUGCGgcUCAAaGUGCU-----ACGGC- -5' |
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24821 | 3' | -53.2 | NC_005284.1 | + | 25588 | 0.67 | 0.811061 |
Target: 5'- cGCGGCGguUGCCGAcuGUUUCgACGAcuacugUGCUGu -3' miRNA: 3'- -CGCUGU--GCGGCU--CAAAG-UGCU------ACGGC- -5' |
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24821 | 3' | -53.2 | NC_005284.1 | + | 14727 | 0.67 | 0.801517 |
Target: 5'- aGCGACGagcaGCCGGGUuugcacguugaaUUCACGcucucgucGCCGc -3' miRNA: 3'- -CGCUGUg---CGGCUCA------------AAGUGCua------CGGC- -5' |
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24821 | 3' | -53.2 | NC_005284.1 | + | 27681 | 0.67 | 0.801517 |
Target: 5'- gGCGugGCGCgCGGGUcgC-CGcUGCCu -3' miRNA: 3'- -CGCugUGCG-GCUCAaaGuGCuACGGc -5' |
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24821 | 3' | -53.2 | NC_005284.1 | + | 4669 | 0.67 | 0.791794 |
Target: 5'- gGCGA-ACGCCGcGUg-CGCGAUcGCCGc -3' miRNA: 3'- -CGCUgUGCGGCuCAaaGUGCUA-CGGC- -5' |
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24821 | 3' | -53.2 | NC_005284.1 | + | 24396 | 0.67 | 0.781903 |
Target: 5'- uCGACAUGCCGAccagcaCACGcggGCCGa -3' miRNA: 3'- cGCUGUGCGGCUcaaa--GUGCua-CGGC- -5' |
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24821 | 3' | -53.2 | NC_005284.1 | + | 44901 | 0.67 | 0.781903 |
Target: 5'- uCGGCGCGCUGAGcuccugcugUGCGGcUGCCGu -3' miRNA: 3'- cGCUGUGCGGCUCaaa------GUGCU-ACGGC- -5' |
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24821 | 3' | -53.2 | NC_005284.1 | + | 10497 | 0.67 | 0.781903 |
Target: 5'- uCGACguagagguucGCGCCGucguAGUggaUCugGGUGCCGc -3' miRNA: 3'- cGCUG----------UGCGGC----UCAa--AGugCUACGGC- -5' |
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24821 | 3' | -53.2 | NC_005284.1 | + | 9130 | 0.67 | 0.771856 |
Target: 5'- -aGAguUGCCGGGUgUCGCGgAUGCUa -3' miRNA: 3'- cgCUguGCGGCUCAaAGUGC-UACGGc -5' |
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24821 | 3' | -53.2 | NC_005284.1 | + | 53740 | 0.67 | 0.768814 |
Target: 5'- cCGACGCgcuGCCGGGUUUCgauuuggcugagauACGGuuugcugaUGCCGg -3' miRNA: 3'- cGCUGUG---CGGCUCAAAG--------------UGCU--------ACGGC- -5' |
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24821 | 3' | -53.2 | NC_005284.1 | + | 411 | 0.68 | 0.761664 |
Target: 5'- gGCGGCGCaaauGgCGAGUUUCGgCGcaAUGCUGg -3' miRNA: 3'- -CGCUGUG----CgGCUCAAAGU-GC--UACGGC- -5' |
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24821 | 3' | -53.2 | NC_005284.1 | + | 25666 | 0.68 | 0.761664 |
Target: 5'- gGCGGCGCaGCCGuucg-CGCGA-GCCa -3' miRNA: 3'- -CGCUGUG-CGGCucaaaGUGCUaCGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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