miRNA display CGI


Results 1 - 20 of 52 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24821 3' -53.2 NC_005284.1 + 46752 0.66 0.85575
Target:  5'- aCGAagucgGCGCCGAGUcacgggaacggUCACGGgauggugcuUGCCGg -3'
miRNA:   3'- cGCUg----UGCGGCUCAa----------AGUGCU---------ACGGC- -5'
24821 3' -53.2 NC_005284.1 + 35378 0.66 0.85575
Target:  5'- aCGGCGCGCCGA---UCACGccUGCa- -3'
miRNA:   3'- cGCUGUGCGGCUcaaAGUGCu-ACGgc -5'
24821 3' -53.2 NC_005284.1 + 14583 0.66 0.835859
Target:  5'- cGCGGCgagggagccagaggACGCCgGAGUUggUCGCGAcGCaCGu -3'
miRNA:   3'- -CGCUG--------------UGCGG-CUCAA--AGUGCUaCG-GC- -5'
24821 3' -53.2 NC_005284.1 + 30428 0.66 0.829573
Target:  5'- cGCGACgGCGagGugcuGUUUCGCGAgucGCCGa -3'
miRNA:   3'- -CGCUG-UGCggCu---CAAAGUGCUa--CGGC- -5'
24821 3' -53.2 NC_005284.1 + 16715 0.66 0.827758
Target:  5'- cGCGACGaGCCacaucggCACGAUGCUGu -3'
miRNA:   3'- -CGCUGUgCGGcucaaa-GUGCUACGGC- -5'
24821 3' -53.2 NC_005284.1 + 20948 0.66 0.820417
Target:  5'- cGCuGCACGCCGcGUgaacuggagcaUCACGAUGgCUGa -3'
miRNA:   3'- -CGcUGUGCGGCuCAa----------AGUGCUAC-GGC- -5'
24821 3' -53.2 NC_005284.1 + 18025 0.67 0.811061
Target:  5'- gGCGACAcggucacgcuCGCCGAGcgcuuCGAcGCCGa -3'
miRNA:   3'- -CGCUGU----------GCGGCUCaaaguGCUaCGGC- -5'
24821 3' -53.2 NC_005284.1 + 25588 0.67 0.811061
Target:  5'- cGCGGCGguUGCCGAcuGUUUCgACGAcuacugUGCUGu -3'
miRNA:   3'- -CGCUGU--GCGGCU--CAAAG-UGCU------ACGGC- -5'
24821 3' -53.2 NC_005284.1 + 43453 0.67 0.811061
Target:  5'- uCGACGCGC--AGUUgCGCGAuccgcUGCCGg -3'
miRNA:   3'- cGCUGUGCGgcUCAAaGUGCU-----ACGGC- -5'
24821 3' -53.2 NC_005284.1 + 44211 0.67 0.811061
Target:  5'- cGCGAUuucucgucgACGCCGAGgUUCgacgucuugagGCGAUccagGCCGg -3'
miRNA:   3'- -CGCUG---------UGCGGCUCaAAG-----------UGCUA----CGGC- -5'
24821 3' -53.2 NC_005284.1 + 14727 0.67 0.801517
Target:  5'- aGCGACGagcaGCCGGGUuugcacguugaaUUCACGcucucgucGCCGc -3'
miRNA:   3'- -CGCUGUg---CGGCUCA------------AAGUGCua------CGGC- -5'
24821 3' -53.2 NC_005284.1 + 27681 0.67 0.801517
Target:  5'- gGCGugGCGCgCGGGUcgC-CGcUGCCu -3'
miRNA:   3'- -CGCugUGCG-GCUCAaaGuGCuACGGc -5'
24821 3' -53.2 NC_005284.1 + 4669 0.67 0.791794
Target:  5'- gGCGA-ACGCCGcGUg-CGCGAUcGCCGc -3'
miRNA:   3'- -CGCUgUGCGGCuCAaaGUGCUA-CGGC- -5'
24821 3' -53.2 NC_005284.1 + 24396 0.67 0.781903
Target:  5'- uCGACAUGCCGAccagcaCACGcggGCCGa -3'
miRNA:   3'- cGCUGUGCGGCUcaaa--GUGCua-CGGC- -5'
24821 3' -53.2 NC_005284.1 + 44901 0.67 0.781903
Target:  5'- uCGGCGCGCUGAGcuccugcugUGCGGcUGCCGu -3'
miRNA:   3'- cGCUGUGCGGCUCaaa------GUGCU-ACGGC- -5'
24821 3' -53.2 NC_005284.1 + 10497 0.67 0.781903
Target:  5'- uCGACguagagguucGCGCCGucguAGUggaUCugGGUGCCGc -3'
miRNA:   3'- cGCUG----------UGCGGC----UCAa--AGugCUACGGC- -5'
24821 3' -53.2 NC_005284.1 + 9130 0.67 0.771856
Target:  5'- -aGAguUGCCGGGUgUCGCGgAUGCUa -3'
miRNA:   3'- cgCUguGCGGCUCAaAGUGC-UACGGc -5'
24821 3' -53.2 NC_005284.1 + 53740 0.67 0.768814
Target:  5'- cCGACGCgcuGCCGGGUUUCgauuuggcugagauACGGuuugcugaUGCCGg -3'
miRNA:   3'- cGCUGUG---CGGCUCAAAG--------------UGCU--------ACGGC- -5'
24821 3' -53.2 NC_005284.1 + 411 0.68 0.761664
Target:  5'- gGCGGCGCaaauGgCGAGUUUCGgCGcaAUGCUGg -3'
miRNA:   3'- -CGCUGUG----CgGCUCAAAGU-GC--UACGGC- -5'
24821 3' -53.2 NC_005284.1 + 25666 0.68 0.761664
Target:  5'- gGCGGCGCaGCCGuucg-CGCGA-GCCa -3'
miRNA:   3'- -CGCUGUG-CGGCucaaaGUGCUaCGGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.