miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24821 3' -53.2 NC_005284.1 + 32347 0.68 0.757549
Target:  5'- aGCGucCACGCCGAGUucUUCGCuguagcguuugGCCa -3'
miRNA:   3'- -CGCu-GUGCGGCUCA--AAGUGcua--------CGGc -5'
24821 3' -53.2 NC_005284.1 + 11752 0.69 0.665304
Target:  5'- aCGGCACGCUGGGUUcgCcCGAguacaucGCCGa -3'
miRNA:   3'- cGCUGUGCGGCUCAAa-GuGCUa------CGGC- -5'
24821 3' -53.2 NC_005284.1 + 41046 0.69 0.676285
Target:  5'- --uGCGCGCCGAcGUUucUCGCGGggcGCCGc -3'
miRNA:   3'- cgcUGUGCGGCU-CAA--AGUGCUa--CGGC- -5'
24821 3' -53.2 NC_005284.1 + 41847 0.69 0.692673
Target:  5'- aGUGGgGCGCCGAGcagcacuuacggUCACGAUugcauugaugaccGCCGg -3'
miRNA:   3'- -CGCUgUGCGGCUCaa----------AGUGCUA-------------CGGC- -5'
24821 3' -53.2 NC_005284.1 + 10385 0.68 0.708929
Target:  5'- aGCGGCuGCGCacgaagcaaGAGgcgUCGCGGgcgGCCGa -3'
miRNA:   3'- -CGCUG-UGCGg--------CUCaa-AGUGCUa--CGGC- -5'
24821 3' -53.2 NC_005284.1 + 41378 0.68 0.719674
Target:  5'- -aGACACGCCcgcggucacGAuGUUUCGCGAgugGCUa -3'
miRNA:   3'- cgCUGUGCGG---------CU-CAAAGUGCUa--CGGc -5'
24821 3' -53.2 NC_005284.1 + 45976 0.68 0.719674
Target:  5'- aGCGugGCGUggaCGAGUggaUUGCGucauUGCCGg -3'
miRNA:   3'- -CGCugUGCG---GCUCAa--AGUGCu---ACGGC- -5'
24821 3' -53.2 NC_005284.1 + 41605 0.68 0.719674
Target:  5'- cGCGAggcCGCGCCGAGU---GCGAgcuCCGa -3'
miRNA:   3'- -CGCU---GUGCGGCUCAaagUGCUac-GGC- -5'
24821 3' -53.2 NC_005284.1 + 51749 0.68 0.74089
Target:  5'- cGCGGCGCGCCugcgggaagugGAGgcguuaGCGGUagGCCGg -3'
miRNA:   3'- -CGCUGUGCGG-----------CUCaaag--UGCUA--CGGC- -5'
24821 3' -53.2 NC_005284.1 + 21594 0.69 0.665304
Target:  5'- aGCGGCAUGCCGAagcGUUgggcaagaucUCGCGc-GCCGc -3'
miRNA:   3'- -CGCUGUGCGGCU---CAA----------AGUGCuaCGGC- -5'
24821 3' -53.2 NC_005284.1 + 31098 0.69 0.654293
Target:  5'- aGCGuACGCGCgCGGGUacugcgagcagcUUCGgGAUGUCGc -3'
miRNA:   3'- -CGC-UGUGCG-GCUCA------------AAGUgCUACGGC- -5'
24821 3' -53.2 NC_005284.1 + 7059 0.71 0.566293
Target:  5'- uGCuACGCGCCGAcgUUCAcCGAcGCCGa -3'
miRNA:   3'- -CGcUGUGCGGCUcaAAGU-GCUaCGGC- -5'
24821 3' -53.2 NC_005284.1 + 10492 0.74 0.385307
Target:  5'- gGCGAUGCGCCGucgguGGUcUCG-GAUGCCGa -3'
miRNA:   3'- -CGCUGUGCGGC-----UCAaAGUgCUACGGC- -5'
24821 3' -53.2 NC_005284.1 + 17471 0.73 0.43093
Target:  5'- cGCGGCauuucguacugggGCGCCGGGUcgguggUCGCGucgGCCGa -3'
miRNA:   3'- -CGCUG-------------UGCGGCUCAa-----AGUGCua-CGGC- -5'
24821 3' -53.2 NC_005284.1 + 35619 0.73 0.440624
Target:  5'- uCGACAgCGCCGAcaagcucgaaugcGUacugcgucaggUUCACGAUGCCGu -3'
miRNA:   3'- cGCUGU-GCGGCU-------------CA-----------AAGUGCUACGGC- -5'
24821 3' -53.2 NC_005284.1 + 1713 0.73 0.451429
Target:  5'- uGCGuuGCGCCGcGaUUCugGGUGCCc -3'
miRNA:   3'- -CGCugUGCGGCuCaAAGugCUACGGc -5'
24821 3' -53.2 NC_005284.1 + 31448 0.73 0.460376
Target:  5'- uGCGGCGCGCCGGGcccccaaUUgacCGCcGUGCCGc -3'
miRNA:   3'- -CGCUGUGCGGCUC-------AAa--GUGcUACGGC- -5'
24821 3' -53.2 NC_005284.1 + 21652 0.72 0.502263
Target:  5'- uGCGAU-CGCCGcg---CACGAUGCCGc -3'
miRNA:   3'- -CGCUGuGCGGCucaaaGUGCUACGGC- -5'
24821 3' -53.2 NC_005284.1 + 23603 0.72 0.512735
Target:  5'- uCGACGCGgCGGGUUuugcUCAUGAgcGCCGa -3'
miRNA:   3'- cGCUGUGCgGCUCAA----AGUGCUa-CGGC- -5'
24821 3' -53.2 NC_005284.1 + 10452 0.71 0.554362
Target:  5'- gGCGACgcgggcgGCGCaaAGUgUCAUGGUGCCGa -3'
miRNA:   3'- -CGCUG-------UGCGgcUCAaAGUGCUACGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.