miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24821 3' -53.2 NC_005284.1 + 35378 0.66 0.85575
Target:  5'- aCGGCGCGCCGA---UCACGccUGCa- -3'
miRNA:   3'- cGCUGUGCGGCUcaaAGUGCu-ACGgc -5'
24821 3' -53.2 NC_005284.1 + 9856 0.73 0.471437
Target:  5'- gGCGAUACaCCGAGg--CGCGGUGCg- -3'
miRNA:   3'- -CGCUGUGcGGCUCaaaGUGCUACGgc -5'
24821 3' -53.2 NC_005284.1 + 38104 0.74 0.403542
Target:  5'- aGCGGCACGCCGAcgccGgccUCACGcucgacgGCCGg -3'
miRNA:   3'- -CGCUGUGCGGCU----Caa-AGUGCua-----CGGC- -5'
24821 3' -53.2 NC_005284.1 + 45368 1.11 0.001395
Target:  5'- aGCGACACGCCGAGUUUCACGAUGCCGu -3'
miRNA:   3'- -CGCUGUGCGGCUCAAAGUGCUACGGC- -5'
24821 3' -53.2 NC_005284.1 + 43453 0.67 0.811061
Target:  5'- uCGACGCGC--AGUUgCGCGAuccgcUGCCGg -3'
miRNA:   3'- cGCUGUGCGgcUCAAaGUGCU-----ACGGC- -5'
24821 3' -53.2 NC_005284.1 + 4669 0.67 0.791794
Target:  5'- gGCGA-ACGCCGcGUg-CGCGAUcGCCGc -3'
miRNA:   3'- -CGCUgUGCGGCuCAaaGUGCUA-CGGC- -5'
24821 3' -53.2 NC_005284.1 + 10497 0.67 0.781903
Target:  5'- uCGACguagagguucGCGCCGucguAGUggaUCugGGUGCCGc -3'
miRNA:   3'- cGCUG----------UGCGGC----UCAa--AGugCUACGGC- -5'
24821 3' -53.2 NC_005284.1 + 24396 0.67 0.781903
Target:  5'- uCGACAUGCCGAccagcaCACGcggGCCGa -3'
miRNA:   3'- cGCUGUGCGGCUcaaa--GUGCua-CGGC- -5'
24821 3' -53.2 NC_005284.1 + 44973 0.69 0.654293
Target:  5'- uGCG-CGCGCCGA-UUUCcUGAcUGCCGg -3'
miRNA:   3'- -CGCuGUGCGGCUcAAAGuGCU-ACGGC- -5'
24821 3' -53.2 NC_005284.1 + 5894 0.7 0.60904
Target:  5'- aGCGACAccuucgcCGCCGGGcgugucCACGgcGCCGa -3'
miRNA:   3'- -CGCUGU-------GCGGCUCaaa---GUGCuaCGGC- -5'
24821 3' -53.2 NC_005284.1 + 53662 0.69 0.695936
Target:  5'- gGCGACGCGCCGucgcccgGGUUgccaaucagcggcUCgaaGCGAcUGCCGu -3'
miRNA:   3'- -CGCUGUGCGGC-------UCAA-------------AG---UGCU-ACGGC- -5'
24821 3' -53.2 NC_005284.1 + 14583 0.66 0.835859
Target:  5'- cGCGGCgagggagccagaggACGCCgGAGUUggUCGCGAcGCaCGu -3'
miRNA:   3'- -CGCUG--------------UGCGG-CUCAA--AGUGCUaCG-GC- -5'
24821 3' -53.2 NC_005284.1 + 20678 0.71 0.577195
Target:  5'- gGCGAUcgGCGUgcAGUUUUACGGUGUCGg -3'
miRNA:   3'- -CGCUG--UGCGgcUCAAAGUGCUACGGC- -5'
24821 3' -53.2 NC_005284.1 + 16715 0.66 0.827758
Target:  5'- cGCGACGaGCCacaucggCACGAUGCUGu -3'
miRNA:   3'- -CGCUGUgCGGcucaaa-GUGCUACGGC- -5'
24821 3' -53.2 NC_005284.1 + 38849 0.68 0.751338
Target:  5'- gGCGucGCGCGCCGAcg-UCAgGAacGCCGg -3'
miRNA:   3'- -CGC--UGUGCGGCUcaaAGUgCUa-CGGC- -5'
24821 3' -53.2 NC_005284.1 + 38623 0.72 0.523295
Target:  5'- uCGACGCGCCGAGccccaUCAgCGAugUGCCc -3'
miRNA:   3'- cGCUGUGCGGCUCaa---AGU-GCU--ACGGc -5'
24821 3' -53.2 NC_005284.1 + 39447 0.82 0.137755
Target:  5'- gGCcuGCACGCCGAGcgacacgaucacccaUUUCGCGAUGCCGc -3'
miRNA:   3'- -CGc-UGUGCGGCUC---------------AAAGUGCUACGGC- -5'
24821 3' -53.2 NC_005284.1 + 44211 0.67 0.811061
Target:  5'- cGCGAUuucucgucgACGCCGAGgUUCgacgucuugagGCGAUccagGCCGg -3'
miRNA:   3'- -CGCUG---------UGCGGCUCaAAG-----------UGCUA----CGGC- -5'
24821 3' -53.2 NC_005284.1 + 44901 0.67 0.781903
Target:  5'- uCGGCGCGCUGAGcuccugcugUGCGGcUGCCGu -3'
miRNA:   3'- cGCUGUGCGGCUCaaa------GUGCU-ACGGC- -5'
24821 3' -53.2 NC_005284.1 + 28438 0.7 0.632218
Target:  5'- cCGGCGCGCCGGcgUUgACcGUGCCGc -3'
miRNA:   3'- cGCUGUGCGGCUcaAAgUGcUACGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.