miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24821 3' -53.2 NC_005284.1 + 411 0.68 0.761664
Target:  5'- gGCGGCGCaaauGgCGAGUUUCGgCGcaAUGCUGg -3'
miRNA:   3'- -CGCUGUG----CgGCUCAAAGU-GC--UACGGC- -5'
24821 3' -53.2 NC_005284.1 + 1713 0.73 0.451429
Target:  5'- uGCGuuGCGCCGcGaUUCugGGUGCCc -3'
miRNA:   3'- -CGCugUGCGGCuCaAAGugCUACGGc -5'
24821 3' -53.2 NC_005284.1 + 4669 0.67 0.791794
Target:  5'- gGCGA-ACGCCGcGUg-CGCGAUcGCCGc -3'
miRNA:   3'- -CGCUgUGCGGCuCAaaGUGCUA-CGGC- -5'
24821 3' -53.2 NC_005284.1 + 5894 0.7 0.60904
Target:  5'- aGCGACAccuucgcCGCCGGGcgugucCACGgcGCCGa -3'
miRNA:   3'- -CGCUGU-------GCGGCUCaaa---GUGCuaCGGC- -5'
24821 3' -53.2 NC_005284.1 + 6661 0.86 0.068768
Target:  5'- -aGACGCGCCGGGUUUgGCGAcgGCCGg -3'
miRNA:   3'- cgCUGUGCGGCUCAAAgUGCUa-CGGC- -5'
24821 3' -53.2 NC_005284.1 + 7059 0.71 0.566293
Target:  5'- uGCuACGCGCCGAcgUUCAcCGAcGCCGa -3'
miRNA:   3'- -CGcUGUGCGGCUcaAAGU-GCUaCGGC- -5'
24821 3' -53.2 NC_005284.1 + 9130 0.67 0.771856
Target:  5'- -aGAguUGCCGGGUgUCGCGgAUGCUa -3'
miRNA:   3'- cgCUguGCGGCUCAaAGUGC-UACGGc -5'
24821 3' -53.2 NC_005284.1 + 9856 0.73 0.471437
Target:  5'- gGCGAUACaCCGAGg--CGCGGUGCg- -3'
miRNA:   3'- -CGCUGUGcGGCUCaaaGUGCUACGgc -5'
24821 3' -53.2 NC_005284.1 + 10385 0.68 0.708929
Target:  5'- aGCGGCuGCGCacgaagcaaGAGgcgUCGCGGgcgGCCGa -3'
miRNA:   3'- -CGCUG-UGCGg--------CUCaa-AGUGCUa--CGGC- -5'
24821 3' -53.2 NC_005284.1 + 10452 0.71 0.554362
Target:  5'- gGCGACgcgggcgGCGCaaAGUgUCAUGGUGCCGa -3'
miRNA:   3'- -CGCUG-------UGCGgcUCAaAGUGCUACGGC- -5'
24821 3' -53.2 NC_005284.1 + 10492 0.74 0.385307
Target:  5'- gGCGAUGCGCCGucgguGGUcUCG-GAUGCCGa -3'
miRNA:   3'- -CGCUGUGCGGC-----UCAaAGUgCUACGGC- -5'
24821 3' -53.2 NC_005284.1 + 10497 0.67 0.781903
Target:  5'- uCGACguagagguucGCGCCGucguAGUggaUCugGGUGCCGc -3'
miRNA:   3'- cGCUG----------UGCGGC----UCAa--AGugCUACGGC- -5'
24821 3' -53.2 NC_005284.1 + 11752 0.69 0.665304
Target:  5'- aCGGCACGCUGGGUUcgCcCGAguacaucGCCGa -3'
miRNA:   3'- cGCUGUGCGGCUCAAa-GuGCUa------CGGC- -5'
24821 3' -53.2 NC_005284.1 + 14583 0.66 0.835859
Target:  5'- cGCGGCgagggagccagaggACGCCgGAGUUggUCGCGAcGCaCGu -3'
miRNA:   3'- -CGCUG--------------UGCGG-CUCAA--AGUGCUaCG-GC- -5'
24821 3' -53.2 NC_005284.1 + 14727 0.67 0.801517
Target:  5'- aGCGACGagcaGCCGGGUuugcacguugaaUUCACGcucucgucGCCGc -3'
miRNA:   3'- -CGCUGUg---CGGCUCA------------AAGUGCua------CGGC- -5'
24821 3' -53.2 NC_005284.1 + 16715 0.66 0.827758
Target:  5'- cGCGACGaGCCacaucggCACGAUGCUGu -3'
miRNA:   3'- -CGCUGUgCGGcucaaa-GUGCUACGGC- -5'
24821 3' -53.2 NC_005284.1 + 17471 0.73 0.43093
Target:  5'- cGCGGCauuucguacugggGCGCCGGGUcgguggUCGCGucgGCCGa -3'
miRNA:   3'- -CGCUG-------------UGCGGCUCAa-----AGUGCua-CGGC- -5'
24821 3' -53.2 NC_005284.1 + 18025 0.67 0.811061
Target:  5'- gGCGACAcggucacgcuCGCCGAGcgcuuCGAcGCCGa -3'
miRNA:   3'- -CGCUGU----------GCGGCUCaaaguGCUaCGGC- -5'
24821 3' -53.2 NC_005284.1 + 20678 0.71 0.577195
Target:  5'- gGCGAUcgGCGUgcAGUUUUACGGUGUCGg -3'
miRNA:   3'- -CGCUG--UGCGgcUCAAAGUGCUACGGC- -5'
24821 3' -53.2 NC_005284.1 + 20948 0.66 0.820417
Target:  5'- cGCuGCACGCCGcGUgaacuggagcaUCACGAUGgCUGa -3'
miRNA:   3'- -CGcUGUGCGGCuCAa----------AGUGCUAC-GGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.