miRNA display CGI


Results 1 - 20 of 52 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24821 3' -53.2 NC_005284.1 + 53740 0.67 0.768814
Target:  5'- cCGACGCgcuGCCGGGUUUCgauuuggcugagauACGGuuugcugaUGCCGg -3'
miRNA:   3'- cGCUGUG---CGGCUCAAAG--------------UGCU--------ACGGC- -5'
24821 3' -53.2 NC_005284.1 + 53662 0.69 0.695936
Target:  5'- gGCGACGCGCCGucgcccgGGUUgccaaucagcggcUCgaaGCGAcUGCCGu -3'
miRNA:   3'- -CGCUGUGCGGC-------UCAA-------------AG---UGCU-ACGGC- -5'
24821 3' -53.2 NC_005284.1 + 51749 0.68 0.74089
Target:  5'- cGCGGCGCGCCugcgggaagugGAGgcguuaGCGGUagGCCGg -3'
miRNA:   3'- -CGCUGUGCGG-----------CUCaaag--UGCUA--CGGC- -5'
24821 3' -53.2 NC_005284.1 + 46752 0.66 0.85575
Target:  5'- aCGAagucgGCGCCGAGUcacgggaacggUCACGGgauggugcuUGCCGg -3'
miRNA:   3'- cGCUg----UGCGGCUCAa----------AGUGCU---------ACGGC- -5'
24821 3' -53.2 NC_005284.1 + 45976 0.68 0.719674
Target:  5'- aGCGugGCGUggaCGAGUggaUUGCGucauUGCCGg -3'
miRNA:   3'- -CGCugUGCG---GCUCAa--AGUGCu---ACGGC- -5'
24821 3' -53.2 NC_005284.1 + 45368 1.11 0.001395
Target:  5'- aGCGACACGCCGAGUUUCACGAUGCCGu -3'
miRNA:   3'- -CGCUGUGCGGCUCAAAGUGCUACGGC- -5'
24821 3' -53.2 NC_005284.1 + 44973 0.69 0.654293
Target:  5'- uGCG-CGCGCCGA-UUUCcUGAcUGCCGg -3'
miRNA:   3'- -CGCuGUGCGGCUcAAAGuGCU-ACGGC- -5'
24821 3' -53.2 NC_005284.1 + 44901 0.67 0.781903
Target:  5'- uCGGCGCGCUGAGcuccugcugUGCGGcUGCCGu -3'
miRNA:   3'- cGCUGUGCGGCUCaaa------GUGCU-ACGGC- -5'
24821 3' -53.2 NC_005284.1 + 44211 0.67 0.811061
Target:  5'- cGCGAUuucucgucgACGCCGAGgUUCgacgucuugagGCGAUccagGCCGg -3'
miRNA:   3'- -CGCUG---------UGCGGCUCaAAG-----------UGCUA----CGGC- -5'
24821 3' -53.2 NC_005284.1 + 43453 0.67 0.811061
Target:  5'- uCGACGCGC--AGUUgCGCGAuccgcUGCCGg -3'
miRNA:   3'- cGCUGUGCGgcUCAAaGUGCU-----ACGGC- -5'
24821 3' -53.2 NC_005284.1 + 41847 0.69 0.692673
Target:  5'- aGUGGgGCGCCGAGcagcacuuacggUCACGAUugcauugaugaccGCCGg -3'
miRNA:   3'- -CGCUgUGCGGCUCaa----------AGUGCUA-------------CGGC- -5'
24821 3' -53.2 NC_005284.1 + 41605 0.68 0.719674
Target:  5'- cGCGAggcCGCGCCGAGU---GCGAgcuCCGa -3'
miRNA:   3'- -CGCU---GUGCGGCUCAaagUGCUac-GGC- -5'
24821 3' -53.2 NC_005284.1 + 41378 0.68 0.719674
Target:  5'- -aGACACGCCcgcggucacGAuGUUUCGCGAgugGCUa -3'
miRNA:   3'- cgCUGUGCGG---------CU-CAAAGUGCUa--CGGc -5'
24821 3' -53.2 NC_005284.1 + 41046 0.69 0.676285
Target:  5'- --uGCGCGCCGAcGUUucUCGCGGggcGCCGc -3'
miRNA:   3'- cgcUGUGCGGCU-CAA--AGUGCUa--CGGC- -5'
24821 3' -53.2 NC_005284.1 + 39447 0.82 0.137755
Target:  5'- gGCcuGCACGCCGAGcgacacgaucacccaUUUCGCGAUGCCGc -3'
miRNA:   3'- -CGc-UGUGCGGCUC---------------AAAGUGCUACGGC- -5'
24821 3' -53.2 NC_005284.1 + 38849 0.68 0.751338
Target:  5'- gGCGucGCGCGCCGAcg-UCAgGAacGCCGg -3'
miRNA:   3'- -CGC--UGUGCGGCUcaaAGUgCUa-CGGC- -5'
24821 3' -53.2 NC_005284.1 + 38623 0.72 0.523295
Target:  5'- uCGACGCGCCGAGccccaUCAgCGAugUGCCc -3'
miRNA:   3'- cGCUGUGCGGCUCaa---AGU-GCU--ACGGc -5'
24821 3' -53.2 NC_005284.1 + 38104 0.74 0.403542
Target:  5'- aGCGGCACGCCGAcgccGgccUCACGcucgacgGCCGg -3'
miRNA:   3'- -CGCUGUGCGGCU----Caa-AGUGCua-----CGGC- -5'
24821 3' -53.2 NC_005284.1 + 35619 0.73 0.440624
Target:  5'- uCGACAgCGCCGAcaagcucgaaugcGUacugcgucaggUUCACGAUGCCGu -3'
miRNA:   3'- cGCUGU-GCGGCU-------------CA-----------AAGUGCUACGGC- -5'
24821 3' -53.2 NC_005284.1 + 35378 0.66 0.85575
Target:  5'- aCGGCGCGCCGA---UCACGccUGCa- -3'
miRNA:   3'- cGCUGUGCGGCUcaaAGUGCu-ACGgc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.