miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24821 3' -53.2 NC_005284.1 + 45368 1.11 0.001395
Target:  5'- aGCGACACGCCGAGUUUCACGAUGCCGu -3'
miRNA:   3'- -CGCUGUGCGGCUCAAAGUGCUACGGC- -5'
24821 3' -53.2 NC_005284.1 + 6661 0.86 0.068768
Target:  5'- -aGACGCGCCGGGUUUgGCGAcgGCCGg -3'
miRNA:   3'- cgCUGUGCGGCUCAAAgUGCUa-CGGC- -5'
24821 3' -53.2 NC_005284.1 + 39447 0.82 0.137755
Target:  5'- gGCcuGCACGCCGAGcgacacgaucacccaUUUCGCGAUGCCGc -3'
miRNA:   3'- -CGc-UGUGCGGCUC---------------AAAGUGCUACGGC- -5'
24821 3' -53.2 NC_005284.1 + 10492 0.74 0.385307
Target:  5'- gGCGAUGCGCCGucgguGGUcUCG-GAUGCCGa -3'
miRNA:   3'- -CGCUGUGCGGC-----UCAaAGUgCUACGGC- -5'
24821 3' -53.2 NC_005284.1 + 38104 0.74 0.403542
Target:  5'- aGCGGCACGCCGAcgccGgccUCACGcucgacgGCCGg -3'
miRNA:   3'- -CGCUGUGCGGCU----Caa-AGUGCua-----CGGC- -5'
24821 3' -53.2 NC_005284.1 + 17471 0.73 0.43093
Target:  5'- cGCGGCauuucguacugggGCGCCGGGUcgguggUCGCGucgGCCGa -3'
miRNA:   3'- -CGCUG-------------UGCGGCUCAa-----AGUGCua-CGGC- -5'
24821 3' -53.2 NC_005284.1 + 35619 0.73 0.440624
Target:  5'- uCGACAgCGCCGAcaagcucgaaugcGUacugcgucaggUUCACGAUGCCGu -3'
miRNA:   3'- cGCUGU-GCGGCU-------------CA-----------AAGUGCUACGGC- -5'
24821 3' -53.2 NC_005284.1 + 1713 0.73 0.451429
Target:  5'- uGCGuuGCGCCGcGaUUCugGGUGCCc -3'
miRNA:   3'- -CGCugUGCGGCuCaAAGugCUACGGc -5'
24821 3' -53.2 NC_005284.1 + 31448 0.73 0.460376
Target:  5'- uGCGGCGCGCCGGGcccccaaUUgacCGCcGUGCCGc -3'
miRNA:   3'- -CGCUGUGCGGCUC-------AAa--GUGcUACGGC- -5'
24821 3' -53.2 NC_005284.1 + 9856 0.73 0.471437
Target:  5'- gGCGAUACaCCGAGg--CGCGGUGCg- -3'
miRNA:   3'- -CGCUGUGcGGCUCaaaGUGCUACGgc -5'
24821 3' -53.2 NC_005284.1 + 21652 0.72 0.502263
Target:  5'- uGCGAU-CGCCGcg---CACGAUGCCGc -3'
miRNA:   3'- -CGCUGuGCGGCucaaaGUGCUACGGC- -5'
24821 3' -53.2 NC_005284.1 + 23603 0.72 0.512735
Target:  5'- uCGACGCGgCGGGUUuugcUCAUGAgcGCCGa -3'
miRNA:   3'- cGCUGUGCgGCUCAA----AGUGCUa-CGGC- -5'
24821 3' -53.2 NC_005284.1 + 38623 0.72 0.523295
Target:  5'- uCGACGCGCCGAGccccaUCAgCGAugUGCCc -3'
miRNA:   3'- cGCUGUGCGGCUCaa---AGU-GCU--ACGGc -5'
24821 3' -53.2 NC_005284.1 + 10452 0.71 0.554362
Target:  5'- gGCGACgcgggcgGCGCaaAGUgUCAUGGUGCCGa -3'
miRNA:   3'- -CGCUG-------UGCGgcUCAaAGUGCUACGGC- -5'
24821 3' -53.2 NC_005284.1 + 7059 0.71 0.566293
Target:  5'- uGCuACGCGCCGAcgUUCAcCGAcGCCGa -3'
miRNA:   3'- -CGcUGUGCGGCUcaAAGU-GCUaCGGC- -5'
24821 3' -53.2 NC_005284.1 + 20678 0.71 0.577195
Target:  5'- gGCGAUcgGCGUgcAGUUUUACGGUGUCGg -3'
miRNA:   3'- -CGCUG--UGCGgcUCAAAGUGCUACGGC- -5'
24821 3' -53.2 NC_005284.1 + 5894 0.7 0.60904
Target:  5'- aGCGACAccuucgcCGCCGGGcgugucCACGgcGCCGa -3'
miRNA:   3'- -CGCUGU-------GCGGCUCaaa---GUGCuaCGGC- -5'
24821 3' -53.2 NC_005284.1 + 28438 0.7 0.632218
Target:  5'- cCGGCGCGCCGGcgUUgACcGUGCCGc -3'
miRNA:   3'- cGCUGUGCGGCUcaAAgUGcUACGGC- -5'
24821 3' -53.2 NC_005284.1 + 44973 0.69 0.654293
Target:  5'- uGCG-CGCGCCGA-UUUCcUGAcUGCCGg -3'
miRNA:   3'- -CGCuGUGCGGCUcAAAGuGCU-ACGGC- -5'
24821 3' -53.2 NC_005284.1 + 31098 0.69 0.654293
Target:  5'- aGCGuACGCGCgCGGGUacugcgagcagcUUCGgGAUGUCGc -3'
miRNA:   3'- -CGC-UGUGCG-GCUCA------------AAGUgCUACGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.