Results 21 - 40 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24821 | 3' | -53.2 | NC_005284.1 | + | 21594 | 0.69 | 0.665304 |
Target: 5'- aGCGGCAUGCCGAagcGUUgggcaagaucUCGCGc-GCCGc -3' miRNA: 3'- -CGCUGUGCGGCU---CAA----------AGUGCuaCGGC- -5' |
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24821 | 3' | -53.2 | NC_005284.1 | + | 11752 | 0.69 | 0.665304 |
Target: 5'- aCGGCACGCUGGGUUcgCcCGAguacaucGCCGa -3' miRNA: 3'- cGCUGUGCGGCUCAAa-GuGCUa------CGGC- -5' |
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24821 | 3' | -53.2 | NC_005284.1 | + | 41046 | 0.69 | 0.676285 |
Target: 5'- --uGCGCGCCGAcGUUucUCGCGGggcGCCGc -3' miRNA: 3'- cgcUGUGCGGCU-CAA--AGUGCUa--CGGC- -5' |
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24821 | 3' | -53.2 | NC_005284.1 | + | 41847 | 0.69 | 0.692673 |
Target: 5'- aGUGGgGCGCCGAGcagcacuuacggUCACGAUugcauugaugaccGCCGg -3' miRNA: 3'- -CGCUgUGCGGCUCaa----------AGUGCUA-------------CGGC- -5' |
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24821 | 3' | -53.2 | NC_005284.1 | + | 53662 | 0.69 | 0.695936 |
Target: 5'- gGCGACGCGCCGucgcccgGGUUgccaaucagcggcUCgaaGCGAcUGCCGu -3' miRNA: 3'- -CGCUGUGCGGC-------UCAA-------------AG---UGCU-ACGGC- -5' |
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24821 | 3' | -53.2 | NC_005284.1 | + | 10385 | 0.68 | 0.708929 |
Target: 5'- aGCGGCuGCGCacgaagcaaGAGgcgUCGCGGgcgGCCGa -3' miRNA: 3'- -CGCUG-UGCGg--------CUCaa-AGUGCUa--CGGC- -5' |
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24821 | 3' | -53.2 | NC_005284.1 | + | 41605 | 0.68 | 0.719674 |
Target: 5'- cGCGAggcCGCGCCGAGU---GCGAgcuCCGa -3' miRNA: 3'- -CGCU---GUGCGGCUCAaagUGCUac-GGC- -5' |
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24821 | 3' | -53.2 | NC_005284.1 | + | 41378 | 0.68 | 0.719674 |
Target: 5'- -aGACACGCCcgcggucacGAuGUUUCGCGAgugGCUa -3' miRNA: 3'- cgCUGUGCGG---------CU-CAAAGUGCUa--CGGc -5' |
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24821 | 3' | -53.2 | NC_005284.1 | + | 45976 | 0.68 | 0.719674 |
Target: 5'- aGCGugGCGUggaCGAGUggaUUGCGucauUGCCGg -3' miRNA: 3'- -CGCugUGCG---GCUCAa--AGUGCu---ACGGC- -5' |
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24821 | 3' | -53.2 | NC_005284.1 | + | 51749 | 0.68 | 0.74089 |
Target: 5'- cGCGGCGCGCCugcgggaagugGAGgcguuaGCGGUagGCCGg -3' miRNA: 3'- -CGCUGUGCGG-----------CUCaaag--UGCUA--CGGC- -5' |
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24821 | 3' | -53.2 | NC_005284.1 | + | 38849 | 0.68 | 0.751338 |
Target: 5'- gGCGucGCGCGCCGAcg-UCAgGAacGCCGg -3' miRNA: 3'- -CGC--UGUGCGGCUcaaAGUgCUa-CGGC- -5' |
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24821 | 3' | -53.2 | NC_005284.1 | + | 32347 | 0.68 | 0.757549 |
Target: 5'- aGCGucCACGCCGAGUucUUCGCuguagcguuugGCCa -3' miRNA: 3'- -CGCu-GUGCGGCUCA--AAGUGcua--------CGGc -5' |
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24821 | 3' | -53.2 | NC_005284.1 | + | 25666 | 0.68 | 0.761664 |
Target: 5'- gGCGGCGCaGCCGuucg-CGCGA-GCCa -3' miRNA: 3'- -CGCUGUG-CGGCucaaaGUGCUaCGGc -5' |
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24821 | 3' | -53.2 | NC_005284.1 | + | 411 | 0.68 | 0.761664 |
Target: 5'- gGCGGCGCaaauGgCGAGUUUCGgCGcaAUGCUGg -3' miRNA: 3'- -CGCUGUG----CgGCUCAAAGU-GC--UACGGC- -5' |
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24821 | 3' | -53.2 | NC_005284.1 | + | 53740 | 0.67 | 0.768814 |
Target: 5'- cCGACGCgcuGCCGGGUUUCgauuuggcugagauACGGuuugcugaUGCCGg -3' miRNA: 3'- cGCUGUG---CGGCUCAAAG--------------UGCU--------ACGGC- -5' |
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24821 | 3' | -53.2 | NC_005284.1 | + | 9130 | 0.67 | 0.771856 |
Target: 5'- -aGAguUGCCGGGUgUCGCGgAUGCUa -3' miRNA: 3'- cgCUguGCGGCUCAaAGUGC-UACGGc -5' |
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24821 | 3' | -53.2 | NC_005284.1 | + | 44901 | 0.67 | 0.781903 |
Target: 5'- uCGGCGCGCUGAGcuccugcugUGCGGcUGCCGu -3' miRNA: 3'- cGCUGUGCGGCUCaaa------GUGCU-ACGGC- -5' |
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24821 | 3' | -53.2 | NC_005284.1 | + | 10497 | 0.67 | 0.781903 |
Target: 5'- uCGACguagagguucGCGCCGucguAGUggaUCugGGUGCCGc -3' miRNA: 3'- cGCUG----------UGCGGC----UCAa--AGugCUACGGC- -5' |
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24821 | 3' | -53.2 | NC_005284.1 | + | 24396 | 0.67 | 0.781903 |
Target: 5'- uCGACAUGCCGAccagcaCACGcggGCCGa -3' miRNA: 3'- cGCUGUGCGGCUcaaa--GUGCua-CGGC- -5' |
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24821 | 3' | -53.2 | NC_005284.1 | + | 4669 | 0.67 | 0.791794 |
Target: 5'- gGCGA-ACGCCGcGUg-CGCGAUcGCCGc -3' miRNA: 3'- -CGCUgUGCGGCuCAaaGUGCUA-CGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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