miRNA display CGI


Results 21 - 40 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24821 3' -53.2 NC_005284.1 + 21594 0.69 0.665304
Target:  5'- aGCGGCAUGCCGAagcGUUgggcaagaucUCGCGc-GCCGc -3'
miRNA:   3'- -CGCUGUGCGGCU---CAA----------AGUGCuaCGGC- -5'
24821 3' -53.2 NC_005284.1 + 21652 0.72 0.502263
Target:  5'- uGCGAU-CGCCGcg---CACGAUGCCGc -3'
miRNA:   3'- -CGCUGuGCGGCucaaaGUGCUACGGC- -5'
24821 3' -53.2 NC_005284.1 + 23603 0.72 0.512735
Target:  5'- uCGACGCGgCGGGUUuugcUCAUGAgcGCCGa -3'
miRNA:   3'- cGCUGUGCgGCUCAA----AGUGCUa-CGGC- -5'
24821 3' -53.2 NC_005284.1 + 24396 0.67 0.781903
Target:  5'- uCGACAUGCCGAccagcaCACGcggGCCGa -3'
miRNA:   3'- cGCUGUGCGGCUcaaa--GUGCua-CGGC- -5'
24821 3' -53.2 NC_005284.1 + 25588 0.67 0.811061
Target:  5'- cGCGGCGguUGCCGAcuGUUUCgACGAcuacugUGCUGu -3'
miRNA:   3'- -CGCUGU--GCGGCU--CAAAG-UGCU------ACGGC- -5'
24821 3' -53.2 NC_005284.1 + 25666 0.68 0.761664
Target:  5'- gGCGGCGCaGCCGuucg-CGCGA-GCCa -3'
miRNA:   3'- -CGCUGUG-CGGCucaaaGUGCUaCGGc -5'
24821 3' -53.2 NC_005284.1 + 27681 0.67 0.801517
Target:  5'- gGCGugGCGCgCGGGUcgC-CGcUGCCu -3'
miRNA:   3'- -CGCugUGCG-GCUCAaaGuGCuACGGc -5'
24821 3' -53.2 NC_005284.1 + 28438 0.7 0.632218
Target:  5'- cCGGCGCGCCGGcgUUgACcGUGCCGc -3'
miRNA:   3'- cGCUGUGCGGCUcaAAgUGcUACGGC- -5'
24821 3' -53.2 NC_005284.1 + 30428 0.66 0.829573
Target:  5'- cGCGACgGCGagGugcuGUUUCGCGAgucGCCGa -3'
miRNA:   3'- -CGCUG-UGCggCu---CAAAGUGCUa--CGGC- -5'
24821 3' -53.2 NC_005284.1 + 31098 0.69 0.654293
Target:  5'- aGCGuACGCGCgCGGGUacugcgagcagcUUCGgGAUGUCGc -3'
miRNA:   3'- -CGC-UGUGCG-GCUCA------------AAGUgCUACGGC- -5'
24821 3' -53.2 NC_005284.1 + 31448 0.73 0.460376
Target:  5'- uGCGGCGCGCCGGGcccccaaUUgacCGCcGUGCCGc -3'
miRNA:   3'- -CGCUGUGCGGCUC-------AAa--GUGcUACGGC- -5'
24821 3' -53.2 NC_005284.1 + 32347 0.68 0.757549
Target:  5'- aGCGucCACGCCGAGUucUUCGCuguagcguuugGCCa -3'
miRNA:   3'- -CGCu-GUGCGGCUCA--AAGUGcua--------CGGc -5'
24821 3' -53.2 NC_005284.1 + 35378 0.66 0.85575
Target:  5'- aCGGCGCGCCGA---UCACGccUGCa- -3'
miRNA:   3'- cGCUGUGCGGCUcaaAGUGCu-ACGgc -5'
24821 3' -53.2 NC_005284.1 + 35619 0.73 0.440624
Target:  5'- uCGACAgCGCCGAcaagcucgaaugcGUacugcgucaggUUCACGAUGCCGu -3'
miRNA:   3'- cGCUGU-GCGGCU-------------CA-----------AAGUGCUACGGC- -5'
24821 3' -53.2 NC_005284.1 + 38104 0.74 0.403542
Target:  5'- aGCGGCACGCCGAcgccGgccUCACGcucgacgGCCGg -3'
miRNA:   3'- -CGCUGUGCGGCU----Caa-AGUGCua-----CGGC- -5'
24821 3' -53.2 NC_005284.1 + 38623 0.72 0.523295
Target:  5'- uCGACGCGCCGAGccccaUCAgCGAugUGCCc -3'
miRNA:   3'- cGCUGUGCGGCUCaa---AGU-GCU--ACGGc -5'
24821 3' -53.2 NC_005284.1 + 38849 0.68 0.751338
Target:  5'- gGCGucGCGCGCCGAcg-UCAgGAacGCCGg -3'
miRNA:   3'- -CGC--UGUGCGGCUcaaAGUgCUa-CGGC- -5'
24821 3' -53.2 NC_005284.1 + 39447 0.82 0.137755
Target:  5'- gGCcuGCACGCCGAGcgacacgaucacccaUUUCGCGAUGCCGc -3'
miRNA:   3'- -CGc-UGUGCGGCUC---------------AAAGUGCUACGGC- -5'
24821 3' -53.2 NC_005284.1 + 41046 0.69 0.676285
Target:  5'- --uGCGCGCCGAcGUUucUCGCGGggcGCCGc -3'
miRNA:   3'- cgcUGUGCGGCU-CAA--AGUGCUa--CGGC- -5'
24821 3' -53.2 NC_005284.1 + 41378 0.68 0.719674
Target:  5'- -aGACACGCCcgcggucacGAuGUUUCGCGAgugGCUa -3'
miRNA:   3'- cgCUGUGCGG---------CU-CAAAGUGCUa--CGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.