miRNA display CGI


Results 21 - 40 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24821 3' -53.2 NC_005284.1 + 35619 0.73 0.440624
Target:  5'- uCGACAgCGCCGAcaagcucgaaugcGUacugcgucaggUUCACGAUGCCGu -3'
miRNA:   3'- cGCUGU-GCGGCU-------------CA-----------AAGUGCUACGGC- -5'
24821 3' -53.2 NC_005284.1 + 1713 0.73 0.451429
Target:  5'- uGCGuuGCGCCGcGaUUCugGGUGCCc -3'
miRNA:   3'- -CGCugUGCGGCuCaAAGugCUACGGc -5'
24821 3' -53.2 NC_005284.1 + 31448 0.73 0.460376
Target:  5'- uGCGGCGCGCCGGGcccccaaUUgacCGCcGUGCCGc -3'
miRNA:   3'- -CGCUGUGCGGCUC-------AAa--GUGcUACGGC- -5'
24821 3' -53.2 NC_005284.1 + 21652 0.72 0.502263
Target:  5'- uGCGAU-CGCCGcg---CACGAUGCCGc -3'
miRNA:   3'- -CGCUGuGCGGCucaaaGUGCUACGGC- -5'
24821 3' -53.2 NC_005284.1 + 23603 0.72 0.512735
Target:  5'- uCGACGCGgCGGGUUuugcUCAUGAgcGCCGa -3'
miRNA:   3'- cGCUGUGCgGCUCAA----AGUGCUa-CGGC- -5'
24821 3' -53.2 NC_005284.1 + 10452 0.71 0.554362
Target:  5'- gGCGACgcgggcgGCGCaaAGUgUCAUGGUGCCGa -3'
miRNA:   3'- -CGCUG-------UGCGgcUCAaAGUGCUACGGC- -5'
24821 3' -53.2 NC_005284.1 + 41847 0.69 0.692673
Target:  5'- aGUGGgGCGCCGAGcagcacuuacggUCACGAUugcauugaugaccGCCGg -3'
miRNA:   3'- -CGCUgUGCGGCUCaa----------AGUGCUA-------------CGGC- -5'
24821 3' -53.2 NC_005284.1 + 41046 0.69 0.676285
Target:  5'- --uGCGCGCCGAcGUUucUCGCGGggcGCCGc -3'
miRNA:   3'- cgcUGUGCGGCU-CAA--AGUGCUa--CGGC- -5'
24821 3' -53.2 NC_005284.1 + 11752 0.69 0.665304
Target:  5'- aCGGCACGCUGGGUUcgCcCGAguacaucGCCGa -3'
miRNA:   3'- cGCUGUGCGGCUCAAa-GuGCUa------CGGC- -5'
24821 3' -53.2 NC_005284.1 + 21594 0.69 0.665304
Target:  5'- aGCGGCAUGCCGAagcGUUgggcaagaucUCGCGc-GCCGc -3'
miRNA:   3'- -CGCUGUGCGGCU---CAA----------AGUGCuaCGGC- -5'
24821 3' -53.2 NC_005284.1 + 31098 0.69 0.654293
Target:  5'- aGCGuACGCGCgCGGGUacugcgagcagcUUCGgGAUGUCGc -3'
miRNA:   3'- -CGC-UGUGCG-GCUCA------------AAGUgCUACGGC- -5'
24821 3' -53.2 NC_005284.1 + 7059 0.71 0.566293
Target:  5'- uGCuACGCGCCGAcgUUCAcCGAcGCCGa -3'
miRNA:   3'- -CGcUGUGCGGCUcaAAGU-GCUaCGGC- -5'
24821 3' -53.2 NC_005284.1 + 10497 0.67 0.781903
Target:  5'- uCGACguagagguucGCGCCGucguAGUggaUCugGGUGCCGc -3'
miRNA:   3'- cGCUG----------UGCGGC----UCAa--AGugCUACGGC- -5'
24821 3' -53.2 NC_005284.1 + 44901 0.67 0.781903
Target:  5'- uCGGCGCGCUGAGcuccugcugUGCGGcUGCCGu -3'
miRNA:   3'- cGCUGUGCGGCUCaaa------GUGCU-ACGGC- -5'
24821 3' -53.2 NC_005284.1 + 4669 0.67 0.791794
Target:  5'- gGCGA-ACGCCGcGUg-CGCGAUcGCCGc -3'
miRNA:   3'- -CGCUgUGCGGCuCAaaGUGCUA-CGGC- -5'
24821 3' -53.2 NC_005284.1 + 43453 0.67 0.811061
Target:  5'- uCGACGCGC--AGUUgCGCGAuccgcUGCCGg -3'
miRNA:   3'- cGCUGUGCGgcUCAAaGUGCU-----ACGGC- -5'
24821 3' -53.2 NC_005284.1 + 44211 0.67 0.811061
Target:  5'- cGCGAUuucucgucgACGCCGAGgUUCgacgucuugagGCGAUccagGCCGg -3'
miRNA:   3'- -CGCUG---------UGCGGCUCaAAG-----------UGCUA----CGGC- -5'
24821 3' -53.2 NC_005284.1 + 16715 0.66 0.827758
Target:  5'- cGCGACGaGCCacaucggCACGAUGCUGu -3'
miRNA:   3'- -CGCUGUgCGGcucaaa-GUGCUACGGC- -5'
24821 3' -53.2 NC_005284.1 + 14583 0.66 0.835859
Target:  5'- cGCGGCgagggagccagaggACGCCgGAGUUggUCGCGAcGCaCGu -3'
miRNA:   3'- -CGCUG--------------UGCGG-CUCAA--AGUGCUaCG-GC- -5'
24821 3' -53.2 NC_005284.1 + 45368 1.11 0.001395
Target:  5'- aGCGACACGCCGAGUUUCACGAUGCCGu -3'
miRNA:   3'- -CGCUGUGCGGCUCAAAGUGCUACGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.