miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24825 3' -52.1 NC_005284.1 + 31272 0.66 0.906707
Target:  5'- gCGUGUCGGcgaUCAGGCg-GAacagGUcCGCGCg -3'
miRNA:   3'- -GUACAGCU---AGUCUGagCUg---CA-GCGCG- -5'
24825 3' -52.1 NC_005284.1 + 46684 0.66 0.906707
Target:  5'- -----aGGUCGGGCUCGAguCGgaaaCGCGCc -3'
miRNA:   3'- guacagCUAGUCUGAGCU--GCa---GCGCG- -5'
24825 3' -52.1 NC_005284.1 + 23081 0.66 0.906707
Target:  5'- gUAUGUCGAUgcGGCU--ACGUaCGCGCu -3'
miRNA:   3'- -GUACAGCUAguCUGAgcUGCA-GCGCG- -5'
24825 3' -52.1 NC_005284.1 + 45412 0.66 0.906707
Target:  5'- aGUGUCGcaGUCGcggccggcGACgauauucgCGGCGUCGCGa -3'
miRNA:   3'- gUACAGC--UAGU--------CUGa-------GCUGCAGCGCg -5'
24825 3' -52.1 NC_005284.1 + 7667 0.66 0.906707
Target:  5'- --cGUCGGUCaauGGGCUgauuucggCGACGUacaGCGUg -3'
miRNA:   3'- guaCAGCUAG---UCUGA--------GCUGCAg--CGCG- -5'
24825 3' -52.1 NC_005284.1 + 10042 0.66 0.90469
Target:  5'- gAUGUCGcgcuugccacgCAGGCUCGugagcgaGCGgaaCGCGCg -3'
miRNA:   3'- gUACAGCua---------GUCUGAGC-------UGCa--GCGCG- -5'
24825 3' -52.1 NC_005284.1 + 43435 0.66 0.899887
Target:  5'- -uUGUCGGUUGcGACcgccUCGACGcgcagUUGCGCg -3'
miRNA:   3'- guACAGCUAGU-CUG----AGCUGC-----AGCGCG- -5'
24825 3' -52.1 NC_005284.1 + 44571 0.66 0.899887
Target:  5'- uGUGUCGAUCacguccuggcGGACaaCGACGUUGUa- -3'
miRNA:   3'- gUACAGCUAG----------UCUGa-GCUGCAGCGcg -5'
24825 3' -52.1 NC_005284.1 + 11246 0.66 0.892794
Target:  5'- uGUGUCGAcCAacgcGGCagCGGC-UCGCGCg -3'
miRNA:   3'- gUACAGCUaGU----CUGa-GCUGcAGCGCG- -5'
24825 3' -52.1 NC_005284.1 + 45157 0.66 0.892794
Target:  5'- --gGUCGA-CGcACggCGACGUCGgGCa -3'
miRNA:   3'- guaCAGCUaGUcUGa-GCUGCAGCgCG- -5'
24825 3' -52.1 NC_005284.1 + 9199 0.66 0.892794
Target:  5'- gCGUGUaugUGAUCAGGCgUCGAUagccgagUGCGCg -3'
miRNA:   3'- -GUACA---GCUAGUCUG-AGCUGca-----GCGCG- -5'
24825 3' -52.1 NC_005284.1 + 33613 0.66 0.892794
Target:  5'- gCGUGcUCGAUgAGccguuGCUCGAgcCG-CGCGCg -3'
miRNA:   3'- -GUAC-AGCUAgUC-----UGAGCU--GCaGCGCG- -5'
24825 3' -52.1 NC_005284.1 + 9291 0.66 0.885433
Target:  5'- --cGaCGAUCGGGCagaCGAUGaCGCGCc -3'
miRNA:   3'- guaCaGCUAGUCUGa--GCUGCaGCGCG- -5'
24825 3' -52.1 NC_005284.1 + 37092 0.66 0.885433
Target:  5'- --cGcCGGcgAGAUUCagGGCGUCGCGCa -3'
miRNA:   3'- guaCaGCUagUCUGAG--CUGCAGCGCG- -5'
24825 3' -52.1 NC_005284.1 + 36640 0.66 0.877807
Target:  5'- uCGUGUagaCGAUCuGGC-CGuCGUCGuCGCu -3'
miRNA:   3'- -GUACA---GCUAGuCUGaGCuGCAGC-GCG- -5'
24825 3' -52.1 NC_005284.1 + 51199 0.66 0.877807
Target:  5'- --cGUCGA-CuGACUUGACGUCGa-- -3'
miRNA:   3'- guaCAGCUaGuCUGAGCUGCAGCgcg -5'
24825 3' -52.1 NC_005284.1 + 49262 0.66 0.87703
Target:  5'- --cG-CGAUCAGGaggCGACGUgacgaagCGCGCu -3'
miRNA:   3'- guaCaGCUAGUCUga-GCUGCA-------GCGCG- -5'
24825 3' -52.1 NC_005284.1 + 7306 0.67 0.853409
Target:  5'- ---cUCGGUguGGC-CGACGUCGaGCa -3'
miRNA:   3'- guacAGCUAguCUGaGCUGCAGCgCG- -5'
24825 3' -52.1 NC_005284.1 + 42015 0.67 0.853409
Target:  5'- gCAUGcCGAUCgAGGaaaUCGAUGaUCGCGg -3'
miRNA:   3'- -GUACaGCUAG-UCUg--AGCUGC-AGCGCg -5'
24825 3' -52.1 NC_005284.1 + 6922 0.67 0.853409
Target:  5'- gGUGgugCGAagGGGuauCUCGGCGUCGCa- -3'
miRNA:   3'- gUACa--GCUagUCU---GAGCUGCAGCGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.