miRNA display CGI


Results 1 - 20 of 50 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24828 3' -57.8 NC_005284.1 + 54459 0.66 0.582256
Target:  5'- -----aGUCCGACGCgGUGcGCGGCAa -3'
miRNA:   3'- cucgaaCGGGCUGCGgCGCuUGCUGU- -5'
24828 3' -57.8 NC_005284.1 + 51395 0.68 0.429254
Target:  5'- cAGCggGCUCGACGCgGCGGAagugcgGGCAc -3'
miRNA:   3'- cUCGaaCGGGCUGCGgCGCUUg-----CUGU- -5'
24828 3' -57.8 NC_005284.1 + 49158 0.67 0.518722
Target:  5'- aGGCggacggGCCCGGCGagGCGAugGAgGa -3'
miRNA:   3'- cUCGaa----CGGGCUGCggCGCUugCUgU- -5'
24828 3' -57.8 NC_005284.1 + 47676 0.68 0.46796
Target:  5'- aGGCgUUGaUCGAUGCCGCuGACGGCAa -3'
miRNA:   3'- cUCG-AACgGGCUGCGGCGcUUGCUGU- -5'
24828 3' -57.8 NC_005284.1 + 46543 0.66 0.560838
Target:  5'- -cGuCUUGCCgaGcCGCagCGCGAGCGACAu -3'
miRNA:   3'- cuC-GAACGGg-CuGCG--GCGCUUGCUGU- -5'
24828 3' -57.8 NC_005284.1 + 46499 0.67 0.487975
Target:  5'- -uGCaUGgCCGACGCCGCacgGGACGGa- -3'
miRNA:   3'- cuCGaACgGGCUGCGGCG---CUUGCUgu -5'
24828 3' -57.8 NC_005284.1 + 45894 0.67 0.477915
Target:  5'- cGAGCgguUG-CCGugGUCGCGcGCGAUg -3'
miRNA:   3'- -CUCGa--ACgGGCugCGGCGCuUGCUGu -5'
24828 3' -57.8 NC_005284.1 + 45621 0.73 0.229316
Target:  5'- uGAGCUgcgccgaacucuUGCCC-AUGCCGCGcGCGAUAg -3'
miRNA:   3'- -CUCGA------------ACGGGcUGCGGCGCuUGCUGU- -5'
24828 3' -57.8 NC_005284.1 + 45348 0.73 0.229316
Target:  5'- cGGCaauccGCCCG--GCCGCGAGCGACAc -3'
miRNA:   3'- cUCGaa---CGGGCugCGGCGCUUGCUGU- -5'
24828 3' -57.8 NC_005284.1 + 45026 0.68 0.429254
Target:  5'- uGAGCUUGCgCCGuCGCCucgaccgcccGCGcuuCGGCAa -3'
miRNA:   3'- -CUCGAACG-GGCuGCGG----------CGCuu-GCUGU- -5'
24828 3' -57.8 NC_005284.1 + 44776 0.66 0.581181
Target:  5'- cGGCUUGCgCaAgGCCGCGGuccgucucggccaGCGACGc -3'
miRNA:   3'- cUCGAACGgGcUgCGGCGCU-------------UGCUGU- -5'
24828 3' -57.8 NC_005284.1 + 44633 0.69 0.392498
Target:  5'- cGAGCgcaucaucgUGCCCGuACG-CGCGAGCGcCGu -3'
miRNA:   3'- -CUCGa--------ACGGGC-UGCgGCGCUUGCuGU- -5'
24828 3' -57.8 NC_005284.1 + 43607 0.69 0.419875
Target:  5'- aGGCUUGCuuuCCGcGCGCgGCGGccGCGGCGc -3'
miRNA:   3'- cUCGAACG---GGC-UGCGgCGCU--UGCUGU- -5'
24828 3' -57.8 NC_005284.1 + 42801 1.07 0.000714
Target:  5'- uGAGCUUGCCCGACGCCGCGAACGACAc -3'
miRNA:   3'- -CUCGAACGGGCUGCGGCGCUUGCUGU- -5'
24828 3' -57.8 NC_005284.1 + 39438 0.67 0.518722
Target:  5'- cGAGCcaucgGCCUGcACGCCGa--GCGACAc -3'
miRNA:   3'- -CUCGaa---CGGGC-UGCGGCgcuUGCUGU- -5'
24828 3' -57.8 NC_005284.1 + 39231 0.67 0.487975
Target:  5'- -uGCUgcGCUCGAuCGUCGUGAGCGugGu -3'
miRNA:   3'- cuCGAa-CGGGCU-GCGGCGCUUGCugU- -5'
24828 3' -57.8 NC_005284.1 + 33623 0.75 0.167093
Target:  5'- uGAGCcgUUGCUCGA-GCCGCGcGCGGCAu -3'
miRNA:   3'- -CUCG--AACGGGCUgCGGCGCuUGCUGU- -5'
24828 3' -57.8 NC_005284.1 + 33544 0.67 0.529143
Target:  5'- aAGCUca-CCGcCGCCGCGAGCuGAUAu -3'
miRNA:   3'- cUCGAacgGGCuGCGGCGCUUG-CUGU- -5'
24828 3' -57.8 NC_005284.1 + 31413 0.67 0.508383
Target:  5'- uGGGCUUGCgCCa--GuUCGCGGGCGACGu -3'
miRNA:   3'- -CUCGAACG-GGcugC-GGCGCUUGCUGU- -5'
24828 3' -57.8 NC_005284.1 + 27989 0.67 0.528098
Target:  5'- -cGCUcGCgCGAUGuugcagcucuaucCCGCGGGCGACAu -3'
miRNA:   3'- cuCGAaCGgGCUGC-------------GGCGCUUGCUGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.