miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24828 3' -57.8 NC_005284.1 + 8205 0.66 0.582256
Target:  5'- cGGCgUUGCCCacuGCGCCGCcaugcuCGGCAa -3'
miRNA:   3'- cUCG-AACGGGc--UGCGGCGcuu---GCUGU- -5'
24828 3' -57.8 NC_005284.1 + 20819 0.68 0.438755
Target:  5'- cGAGCa-GCCCGcagcaGCGCCggccgacgaGCGGGCGGCGc -3'
miRNA:   3'- -CUCGaaCGGGC-----UGCGG---------CGCUUGCUGU- -5'
24828 3' -57.8 NC_005284.1 + 43607 0.69 0.419875
Target:  5'- aGGCUUGCuuuCCGcGCGCgGCGGccGCGGCGc -3'
miRNA:   3'- cUCGAACG---GGC-UGCGgCGCU--UGCUGU- -5'
24828 3' -57.8 NC_005284.1 + 42801 1.07 0.000714
Target:  5'- uGAGCUUGCCCGACGCCGCGAACGACAc -3'
miRNA:   3'- -CUCGAACGGGCUGCGGCGCUUGCUGU- -5'
24828 3' -57.8 NC_005284.1 + 9887 0.66 0.560838
Target:  5'- -cGCacccGCCCGGauaGuuGUGAGCGACGg -3'
miRNA:   3'- cuCGaa--CGGGCUg--CggCGCUUGCUGU- -5'
24828 3' -57.8 NC_005284.1 + 46543 0.66 0.560838
Target:  5'- -cGuCUUGCCgaGcCGCagCGCGAGCGACAu -3'
miRNA:   3'- cuC-GAACGGg-CuGCG--GCGCUUGCUGU- -5'
24828 3' -57.8 NC_005284.1 + 33544 0.67 0.529143
Target:  5'- aAGCUca-CCGcCGCCGCGAGCuGAUAu -3'
miRNA:   3'- cUCGAacgGGCuGCGGCGCUUG-CUGU- -5'
24828 3' -57.8 NC_005284.1 + 39438 0.67 0.518722
Target:  5'- cGAGCcaucgGCCUGcACGCCGa--GCGACAc -3'
miRNA:   3'- -CUCGaa---CGGGC-UGCGGCgcuUGCUGU- -5'
24828 3' -57.8 NC_005284.1 + 23345 0.67 0.498132
Target:  5'- uGGGg--GCCCGgcGCGCCGC-AGCGGCGc -3'
miRNA:   3'- -CUCgaaCGGGC--UGCGGCGcUUGCUGU- -5'
24828 3' -57.8 NC_005284.1 + 19241 0.68 0.458112
Target:  5'- aGGCUcuucgGCUCGACcUCGCGAccGCGACAc -3'
miRNA:   3'- cUCGAa----CGGGCUGcGGCGCU--UGCUGU- -5'
24828 3' -57.8 NC_005284.1 + 9611 0.67 0.488986
Target:  5'- cGAGCgucuucacgaucuccUGCCCGACGUCGCcguGCGuCGa -3'
miRNA:   3'- -CUCGa--------------ACGGGCUGCGGCGcu-UGCuGU- -5'
24828 3' -57.8 NC_005284.1 + 7090 0.67 0.508383
Target:  5'- cGAGCgcgcgUGCCCuuccuUGCCGUcAGCGGCAu -3'
miRNA:   3'- -CUCGa----ACGGGcu---GCGGCGcUUGCUGU- -5'
24828 3' -57.8 NC_005284.1 + 44776 0.66 0.581181
Target:  5'- cGGCUUGCgCaAgGCCGCGGuccgucucggccaGCGACGc -3'
miRNA:   3'- cUCGAACGgGcUgCGGCGCU-------------UGCUGU- -5'
24828 3' -57.8 NC_005284.1 + 45894 0.67 0.477915
Target:  5'- cGAGCgguUG-CCGugGUCGCGcGCGAUg -3'
miRNA:   3'- -CUCGa--ACgGGCugCGGCGCuUGCUGu -5'
24828 3' -57.8 NC_005284.1 + 19173 0.66 0.571523
Target:  5'- cGAGCUUG-UCGGCGCUGU---CGACAg -3'
miRNA:   3'- -CUCGAACgGGCUGCGGCGcuuGCUGU- -5'
24828 3' -57.8 NC_005284.1 + 9336 0.67 0.512508
Target:  5'- cGAGCaacuggucGCCCGAcaaucgcgaCGCCGCGAauaucgucgccggccGCGACu -3'
miRNA:   3'- -CUCGaa------CGGGCU---------GCGGCGCU---------------UGCUGu -5'
24828 3' -57.8 NC_005284.1 + 5400 0.68 0.46796
Target:  5'- -uGCUUGCCCGugcggcGCGCCagcucGCGcuCGGCGa -3'
miRNA:   3'- cuCGAACGGGC------UGCGG-----CGCuuGCUGU- -5'
24828 3' -57.8 NC_005284.1 + 45026 0.68 0.429254
Target:  5'- uGAGCUUGCgCCGuCGCCucgaccgcccGCGcuuCGGCAa -3'
miRNA:   3'- -CUCGAACG-GGCuGCGG----------CGCuu-GCUGU- -5'
24828 3' -57.8 NC_005284.1 + 7710 0.66 0.571523
Target:  5'- --cCUUGCCCGAUGCCcCGua-GACGu -3'
miRNA:   3'- cucGAACGGGCUGCGGcGCuugCUGU- -5'
24828 3' -57.8 NC_005284.1 + 930 0.66 0.539641
Target:  5'- -cGCUgUGCUCGAUGCUgaacugGCGGGCGAUc -3'
miRNA:   3'- cuCGA-ACGGGCUGCGG------CGCUUGCUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.