miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24842 3' -57.7 NC_005284.1 + 43457 0.66 0.643578
Target:  5'- cGCGCAguugcGCGAUCCGCUGcCGGauguugUCGAg -3'
miRNA:   3'- -CGCGUa----UGCUGGGCGGCaGCU------GGCUg -5'
24842 3' -57.7 NC_005284.1 + 8978 0.66 0.643578
Target:  5'- aGUGCGUGCGgacACCuuCGCCGagcauGCCGACg -3'
miRNA:   3'- -CGCGUAUGC---UGG--GCGGCagc--UGGCUG- -5'
24842 3' -57.7 NC_005284.1 + 43831 0.66 0.643578
Target:  5'- uUGUAUGCG-UCCGCuCGUCcggcgacgaGGCCGGCc -3'
miRNA:   3'- cGCGUAUGCuGGGCG-GCAG---------CUGGCUG- -5'
24842 3' -57.7 NC_005284.1 + 38970 0.66 0.643578
Target:  5'- uGCGCgAUGCuGAUCCGCgGgcugCGcGCUGGCg -3'
miRNA:   3'- -CGCG-UAUG-CUGGGCGgCa---GC-UGGCUG- -5'
24842 3' -57.7 NC_005284.1 + 10081 0.66 0.639302
Target:  5'- cGCGCGgcgaccGCGACCgCGgCGggucugaagacggCGACCGAa -3'
miRNA:   3'- -CGCGUa-----UGCUGG-GCgGCa------------GCUGGCUg -5'
24842 3' -57.7 NC_005284.1 + 9586 0.66 0.632887
Target:  5'- aGCGCAggGCGAUCgCGCUGcCGcGgCGGCg -3'
miRNA:   3'- -CGCGUa-UGCUGG-GCGGCaGC-UgGCUG- -5'
24842 3' -57.7 NC_005284.1 + 44655 0.66 0.632887
Target:  5'- cGCGCGaGCG-CCgucugCGCCGUCG-CCGcGCu -3'
miRNA:   3'- -CGCGUaUGCuGG-----GCGGCAGCuGGC-UG- -5'
24842 3' -57.7 NC_005284.1 + 14582 0.66 0.631817
Target:  5'- uGCGCuugGCGAUCuCGUCGgcgCGAaaguguuCCGGCg -3'
miRNA:   3'- -CGCGua-UGCUGG-GCGGCa--GCU-------GGCUG- -5'
24842 3' -57.7 NC_005284.1 + 37117 0.66 0.622195
Target:  5'- uCGC--GCGAuCCCGUCGUCGuCCuGCa -3'
miRNA:   3'- cGCGuaUGCU-GGGCGGCAGCuGGcUG- -5'
24842 3' -57.7 NC_005284.1 + 39440 0.66 0.622195
Target:  5'- aGC-CAU-CGGCCUGCaCGcCGAgCGACa -3'
miRNA:   3'- -CGcGUAuGCUGGGCG-GCaGCUgGCUG- -5'
24842 3' -57.7 NC_005284.1 + 51585 0.66 0.622195
Target:  5'- uCGCGUugG-CUggaGCCGUCGuuccCCGGCa -3'
miRNA:   3'- cGCGUAugCuGGg--CGGCAGCu---GGCUG- -5'
24842 3' -57.7 NC_005284.1 + 16296 0.66 0.622195
Target:  5'- uGCGCAggGCGAgCCgguGCCGcUCGucAUCGGCg -3'
miRNA:   3'- -CGCGUa-UGCUgGG---CGGC-AGC--UGGCUG- -5'
24842 3' -57.7 NC_005284.1 + 46435 0.66 0.622195
Target:  5'- -aGCGaACGAaccgaUCGCCGUCG-CCGAa -3'
miRNA:   3'- cgCGUaUGCUg----GGCGGCAGCuGGCUg -5'
24842 3' -57.7 NC_005284.1 + 23299 0.66 0.622195
Target:  5'- gGCGUGUAU--CCCGgCGUCG-UCGACg -3'
miRNA:   3'- -CGCGUAUGcuGGGCgGCAGCuGGCUG- -5'
24842 3' -57.7 NC_005284.1 + 8887 0.66 0.622195
Target:  5'- uGCGCAUcgcgcGCGACacaCGgcaaCCGcUCGACgCGACa -3'
miRNA:   3'- -CGCGUA-----UGCUGg--GC----GGC-AGCUG-GCUG- -5'
24842 3' -57.7 NC_005284.1 + 7896 0.66 0.621126
Target:  5'- -aGCAUGCGAa-CGCCGgguucaaUCG-CCGGCg -3'
miRNA:   3'- cgCGUAUGCUggGCGGC-------AGCuGGCUG- -5'
24842 3' -57.7 NC_005284.1 + 27126 0.66 0.621126
Target:  5'- uGCGCGU---GCCCGCCG-CGACgcaucugCGAUg -3'
miRNA:   3'- -CGCGUAugcUGGGCGGCaGCUG-------GCUG- -5'
24842 3' -57.7 NC_005284.1 + 22107 0.66 0.611511
Target:  5'- gGCGCuUGCGGUCCGCUGgccccCG-CCGAUg -3'
miRNA:   3'- -CGCGuAUGCUGGGCGGCa----GCuGGCUG- -5'
24842 3' -57.7 NC_005284.1 + 10932 0.66 0.600845
Target:  5'- uGCGCA---GGCCCGCa--UGGCCGGCc -3'
miRNA:   3'- -CGCGUaugCUGGGCGgcaGCUGGCUG- -5'
24842 3' -57.7 NC_005284.1 + 45691 0.66 0.600845
Target:  5'- aCGCcuucACGA-CCGCgCGUCGACaCGGCu -3'
miRNA:   3'- cGCGua--UGCUgGGCG-GCAGCUG-GCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.